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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0131100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Legume lectin, beta domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.75 (0.0822) R2 : 0.88
β1 : 7.51 (0.296) R2dD : 0.32 R2D : 0.047
β2 : 3.19 (0.156) R2dC : 0.111 R2C : -0.122
β3 : -4.28 (0.374) R2dE : 0.12 R2E : 0.0689
β4 : 3.61 (0.703) R2dD*C : 0.007 R2D*C : -0.257
β5 : -14.3 (1.32) R2dD*E : 0.104 R2D*E : -0.448
γ1 : 4.84 (0.154) R2dN8 : 0.504 R2N8 : 0.226
σ : 1.13
deviance : 579.31
__
_____
C
peak time of C : 6.89
E
wheather : radiation
threshold : 20.78
memory length : 3940
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16
open length of G : 14.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
579.31 1.13 5.75 7.51 3.19 -4.28 3.61 -14.3 4.84 6.89 20.78 3940 16 14.9
683.85 1.22 6.17 7.7 3.5 -3.12 3.95 -- 5.15 6.57 -3.862 6487 15.8 14.1
610.84 1.15 5.74 7.54 3.21 -4.18 -- -14.2 4.87 6.85 20.79 3936 16 14.9
710.65 1.24 6.16 8.06 3.46 -3.24 -- -- 5.23 6.14 -5.351 6413 15.7 13.4
1146.21 1.58 5.8 7.67 -- -4.18 -- -14.1 4.9 -- 20.81 3931 16.1 14.9
768.73 1.3 6.22 8.99 3.15 -- 3.69 -- 4.99 7.17 -- -- -- --
804.54 1.33 6.23 9.06 3.16 -- -- -- 4.98 7.09 -- -- -- --
1130.77 1.57 6.25 9.15 -- -3.5 -- -- 5.26 -- -11.12 7450 14.8 14.3
873.61 1.38 6.61 -- 3.2 -9.35 -- -- 3.28 6.98 -31.22 47520 17.9 11.8
1330.74 1.7 6.3 9.12 -- -- -- -- 5.04 -- -- -- -- --
2967.16 2.55 6.45 -- 3.26 -- -- -- 3.97 6.91 -- -- -- --
1407.66 1.75 6.68 -- -- -9.32 -- -- 3.34 -- -30.04 47520 17.9 11.7
3524.54 2.77 6.53 -- -- -- -- -- 4.02 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 586.91 humidity 80.0 14400 < th dose independent rect. 17 1
2 587.32 humidity 80.0 14400 > th dose independent rect. 17 1
3 593.37 humidity 90.0 14400 < th dose independent rect. 21 1
4 594.56 wind 9.0 43200 > th dose dependent rect. 17 14
5 595.19 wind 9.0 43200 > th dose dependent rect. 20 8
10 596.65 wind 9.0 43200 > th dose dependent rect. 18 12
12 596.95 radiation 20.0 4320 > th dose dependent rect. 16 15
13 597.44 wind 9.0 43200 > th dose dependent rect. 20 4
15 597.77 radiation 20.0 4320 > th dose dependent rect. 16 1
31 597.94 radiation 10.0 14400 < th dose independent rect. 17 13
39 599.26 radiation 10.0 14400 < th dose independent rect. 17 6
41 599.32 radiation 10.0 14400 < th dose independent rect. 17 2
57 601.47 wind 9.0 43200 > th dose independent rect. 18 13
58 602.13 wind 9.0 43200 > th dose independent rect. 18 11
68 603.71 wind 9.0 43200 > th dose independent rect. 20 8
74 604.94 wind 9.0 43200 < th dose independent rect. 18 13
81 605.78 wind 1.0 43200 < th dose dependent rect. 20 1
82 605.88 wind 9.0 43200 < th dose independent rect. 18 10
93 607.60 humidity 80.0 14400 > th dose dependent rect. 21 2
100 608.28 wind 9.0 43200 < th dose independent rect. 20 11
102 608.43 humidity 90.0 14400 > th dose independent rect. 21 1
103 608.43 wind 9.0 43200 > th dose independent rect. 18 6
105 608.51 wind 9.0 43200 < th dose independent rect. 20 8
107 608.79 wind 9.0 43200 > th dose independent rect. 20 5
109 609.13 radiation 20.0 4320 < th dose independent rect. 16 15
118 609.86 humidity 80.0 14400 > th dose dependent rect. 18 1
123 610.75 atmosphere 995.0 43200 < th dose dependent rect. 15 1
130 611.35 atmosphere 995.0 43200 < th dose independent rect. 14 1
131 611.65 humidity 90.0 14400 < th dose independent rect. 18 6
134 611.97 wind 9.0 43200 > th dose dependent rect. 19 2
140 612.54 wind 9.0 43200 < th dose independent rect. 18 6
151 613.33 wind 5.0 43200 > th dose independent rect. 6 1
162 614.75 radiation 40.0 43200 < th dose dependent rect. 18 5
166 614.89 wind 9.0 43200 > th dose dependent sin 13 NA
167 614.94 humidity 80.0 14400 > th dose dependent rect. 17 6
174 615.17 wind 5.0 43200 > th dose dependent rect. 6 1
176 615.27 radiation 40.0 43200 < th dose dependent rect. 18 1
188 615.59 wind 9.0 43200 < th dose independent rect. 20 5
204 616.12 wind 5.0 43200 < th dose independent rect. 6 1
226 616.82 humidity 80.0 14400 > th dose dependent rect. 17 9
240 617.13 atmosphere 995.0 43200 > th dose independent rect. 11 5
242 617.15 atmosphere 995.0 43200 > th dose independent rect. 9 7
252 617.53 wind 7.0 43200 > th dose independent rect. 20 1
253 617.54 atmosphere 995.0 43200 < th dose independent rect. 9 7
261 617.75 wind 9.0 43200 > th dose independent sin 11 NA
263 617.80 humidity 80.0 43200 > th dose independent rect. 23 1
305 619.55 precipitation 0.1 43200 < th dose independent rect. 17 1
306 619.55 precipitation 0.1 43200 < th dose dependent rect. 17 1
309 619.72 radiation 1.0 43200 > th dose dependent rect. 18 1
330 619.97 precipitation 0.1 43200 > th dose independent rect. 17 1
334 620.16 wind 9.0 43200 < th dose independent sin 11 NA
346 620.45 wind 9.0 14400 < th dose independent rect. 18 3
365 621.15 atmosphere 995.0 43200 > th dose independent rect. 7 13
389 621.58 wind 7.0 43200 < th dose independent rect. 20 1
395 621.67 radiation 30.0 4320 > th dose dependent rect. 15 17
396 621.68 humidity 60.0 43200 > th dose independent rect. 15 19
398 621.81 wind 9.0 14400 > th dose independent rect. 18 3
426 622.34 radiation 1.0 14400 > th dose independent rect. 17 12
446 622.61 atmosphere 1000.0 43200 < th dose dependent rect. 2 1
484 623.39 humidity 90.0 14400 > th dose independent rect. 19 7
511 623.89 humidity 90.0 14400 < th dose independent sin 15 NA
520 624.12 humidity 60.0 43200 < th dose independent rect. 15 20
561 624.80 radiation 1.0 14400 > th dose independent rect. 17 1
599 625.59 radiation 30.0 4320 < th dose independent rect. 15 17
600 625.59 precipitation 0.1 43200 > th dose dependent rect. 17 1
629 625.94 atmosphere 995.0 43200 < th dose independent sin 23 NA
656 626.33 atmosphere 995.0 43200 > th dose independent sin 23 NA
663 626.53 humidity 80.0 14400 > th dose dependent sin 15 NA
702 627.16 wind 3.0 43200 > th dose dependent rect. 15 18
724 627.43 wind 5.0 43200 < th dose independent rect. 15 18
791 628.36 humidity 60.0 14400 < th dose dependent rect. 17 16
808 628.78 radiation 1.0 14400 < th dose independent sin 13 NA
821 628.89 wind 5.0 43200 > th dose independent rect. 15 18
825 628.94 atmosphere 1005.0 14400 < th dose independent rect. 22 1
854 629.30 humidity 50.0 14400 > th dose dependent rect. 22 1
935 630.32 humidity 60.0 14400 < th dose dependent rect. 17 3
981 630.83 humidity 60.0 14400 > th dose independent rect. 18 5