Os07g0130900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Resistance protein candidate (Fragment).
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Os07g0130900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Resistance protein candidate (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 170.94 | 0.614 | 9.64 | 0.687 | 0.48 | -2.52 | -0.109 | 0.626 | 0.526 | 7.54 | 1.03 | 1468 | -- | -- |
| 170.5 | 0.608 | 9.65 | 0.742 | 0.477 | -2.69 | -0.185 | -- | 0.536 | 7.21 | 0.9996 | 1480 | -- | -- |
| 169.95 | 0.607 | 9.65 | 0.674 | 0.442 | -2.55 | -- | 0.89 | 0.529 | 7.08 | 1.04 | 1482 | -- | -- |
| 169.94 | 0.607 | 9.65 | 0.754 | 0.463 | -2.74 | -- | -- | 0.524 | 6.15 | 1.04 | 1492 | -- | -- |
| 180.74 | 0.626 | 9.65 | 0.686 | -- | -2.6 | -- | 0.827 | 0.534 | -- | 1.04 | 1492 | -- | -- |
| 251.88 | 0.744 | 9.56 | 1.27 | 0.618 | -- | -0.504 | -- | 0.859 | 8.86 | -- | -- | -- | -- |
| 252.66 | 0.744 | 9.56 | 1.26 | 0.624 | -- | -- | -- | 0.857 | 8.64 | -- | -- | -- | -- |
| 181.07 | 0.627 | 9.64 | 0.745 | -- | -2.79 | -- | -- | 0.572 | -- | 0.99 | 1489 | -- | -- |
| 180.62 | 0.626 | 9.65 | -- | 0.493 | -3.21 | -- | -- | 0.409 | 5.74 | 0.6713 | 1494 | -- | -- |
| 274.59 | 0.774 | 9.58 | 1.26 | -- | -- | -- | -- | 0.863 | -- | -- | -- | -- | -- |
| 294.17 | 0.802 | 9.59 | -- | 0.628 | -- | -- | -- | 0.718 | 8.49 | -- | -- | -- | -- |
| 192.76 | 0.647 | 9.65 | -- | -- | -3.21 | -- | -- | 0.436 | -- | 0.68 | 1487 | -- | -- |
| 316.25 | 0.83 | 9.61 | -- | -- | -- | -- | -- | 0.723 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 162.62 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 2 | 162.97 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 16 | 167.06 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 17 | 167.14 | radiation | 1 | 1440 | < th | dose dependent | sin | 23 | NA |
| 19 | 167.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 23 | 167.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 26 | 167.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 28 | 167.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 38 | 168.37 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 46 | 168.52 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 55 | 168.61 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 58 | 168.65 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 60 | 168.67 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 61 | 168.67 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 68 | 168.68 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 21 |
| 71 | 168.73 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 83 | 168.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 19 |
| 84 | 168.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 17 |
| 87 | 168.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 93 | 169.00 | radiation | 1 | 1440 | < th | dose independent | sin | 23 | NA |
| 101 | 169.21 | radiation | 1 | 1440 | > th | dose independent | sin | 23 | NA |
| 253 | 172.40 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 254 | 172.44 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 271 | 172.58 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 274 | 172.59 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 324 | 173.37 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 325 | 173.38 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 22 |
| 327 | 173.43 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 20 |
| 328 | 173.44 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 330 | 173.46 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 339 | 173.69 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 352 | 173.76 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 22 |
| 354 | 173.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 356 | 173.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 21 |
| 357 | 173.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 359 | 173.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 360 | 173.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 361 | 173.86 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 19 |
| 364 | 173.86 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 365 | 173.86 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 18 |
| 366 | 173.87 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 368 | 173.87 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 369 | 173.87 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 21 |
| 376 | 173.88 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 439 | 174.18 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 526 | 174.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 531 | 174.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 21 |
| 535 | 174.92 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 539 | 174.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 541 | 174.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 21 |
| 615 | 175.70 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 665 | 176.53 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 666 | 176.53 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 769 | 178.32 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 6 |
| 816 | 179.03 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 842 | 180.07 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 847 | 180.10 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 7 |
| 876 | 180.93 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 882 | 181.12 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 891 | 181.43 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 894 | 181.46 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 912 | 181.94 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 7 |
| 936 | 182.52 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 970 | 183.43 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 11 |
| 994 | 184.11 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |