Os07g0130800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Resistance protein candidate (Fragment).
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Os07g0130800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Resistance protein candidate (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 293.22 | 0.805 | 9.38 | 3.86 | 1.17 | 1.27 | 0.0147 | -2.49 | 1.07 | 21.3 | 19.6 | 1075 | -- | -- |
| 303.29 | 0.811 | 9.32 | 4.18 | 1.16 | 1.84 | -0.197 | -- | 1.15 | 21.3 | 19.3 | 1093 | -- | -- |
| 293.22 | 0.798 | 9.38 | 3.86 | 1.17 | 1.27 | -- | -2.49 | 1.07 | 21.3 | 19.6 | 1075 | -- | -- |
| 303.6 | 0.812 | 9.32 | 4.18 | 1.15 | 1.86 | -- | -- | 1.14 | 21.3 | 19.3 | 1093 | -- | -- |
| 366.59 | 0.892 | 9.35 | 3.83 | -- | 1.48 | -- | -2.19 | 1.01 | -- | 20.15 | 892 | -- | -- |
| 361.7 | 0.892 | 9.25 | 4.84 | 1.27 | -- | -0.626 | -- | 1.45 | 21.8 | -- | -- | -- | -- |
| 363.07 | 0.892 | 9.25 | 4.86 | 1.28 | -- | -- | -- | 1.46 | 21.6 | -- | -- | -- | -- |
| 375.41 | 0.902 | 9.31 | 4.1 | -- | 2.07 | -- | -- | 1.08 | -- | 19.3 | 900 | -- | -- |
| 385.57 | 0.915 | 9.56 | -- | 1.25 | 4.14 | -- | -- | 0.0735 | 21.5 | 17.2 | 47520 | -- | -- |
| 460.09 | 1 | 9.21 | 4.87 | -- | -- | -- | -- | 1.45 | -- | -- | -- | -- | -- |
| 985.92 | 1.47 | 9.37 | -- | 1.29 | -- | -- | -- | 0.914 | 21.9 | -- | -- | -- | -- |
| 477.83 | 1.02 | 9.53 | -- | -- | 4.16 | -- | -- | 0.0645 | -- | 17.24 | 47520 | -- | -- |
| 1086.18 | 1.54 | 9.33 | -- | -- | -- | -- | -- | 0.912 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 277.88 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 22 | 17 |
| 2 | 277.91 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 20 | 19 |
| 6 | 278.44 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 7 | 278.70 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 14 |
| 8 | 278.98 | atmosphere | 995 | 43200 | > th | dose independent | sin | 5 | NA |
| 10 | 279.57 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 13 | 279.67 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 17 |
| 17 | 280.07 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 17 | NA |
| 21 | 280.36 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 20 |
| 26 | 281.00 | atmosphere | 995 | 43200 | < th | dose independent | sin | 5 | NA |
| 50 | 283.64 | wind | 3 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 66 | 285.18 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 67 | 285.18 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 86 | 285.94 | radiation | 20 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 103 | 286.33 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 4 |
| 169 | 287.74 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 170 | 287.76 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 17 |
| 182 | 287.96 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 184 | 287.97 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 186 | 287.98 | radiation | 30 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 193 | 288.05 | radiation | 30 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 223 | 288.30 | wind | 3 | 43200 | < th | dose dependent | rect. | 1 | 10 |
| 228 | 288.36 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 14 |
| 230 | 288.40 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 233 | 288.47 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 261 | 288.73 | wind | 1 | 43200 | > th | dose dependent | rect. | 19 | 15 |
| 293 | 289.03 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 15 |
| 323 | 289.20 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 15 |
| 383 | 289.72 | wind | 5 | 43200 | < th | dose dependent | sin | 9 | NA |
| 422 | 289.94 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 465 | 290.09 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 495 | 290.16 | wind | 1 | 43200 | > th | dose dependent | sin | 10 | NA |
| 540 | 290.38 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 552 | 290.47 | wind | 3 | 43200 | > th | dose independent | sin | 7 | NA |
| 565 | 290.50 | wind | 3 | 43200 | < th | dose independent | sin | 7 | NA |
| 593 | 290.66 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 866 | 291.87 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 867 | 291.87 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 4 |
| 874 | 291.89 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 910 | 291.97 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 911 | 291.98 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 916 | 292.01 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 18 |
| 937 | 292.09 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 945 | 292.10 | atmosphere | 995 | 43200 | < th | dose dependent | no | NA | NA |
| 946 | 292.10 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 22 |
| 996 | 292.25 | wind | 9 | 43200 | > th | dose dependent | sin | 12 | NA |