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Os07g0130700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Lectin-like receptor kinase 7;1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.09 (0.0608) R2 : 0.435
β1 : 3.65 (0.222) R2dD : 1.23 R2D : -1.15
β2 : 0.588 (0.0871) R2dC : 0.073 R2C : -0.57
β3 : -7.9 (0.526) R2dE : 4.64 R2E : -5.85
β4 : 3.14 (0.32) R2dD*C : 0.143 R2D*C : -0.573
β5 : -20.8 (1.45) R2dD*E : 3.56 R2D*E : -2.05
γ1 : 0.652 (0.0801) R2dN8 : 0.149 R2N8 : -0.802
σ : 0.609
deviance : 168.04
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C
peak time of C : 23.2
E
wheather : radiation
threshold : 10.11
memory length : 4320
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 22
open length of G : 7.02

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
168.04 0.609 8.09 3.65 0.588 -7.9 3.14 -20.8 0.652 23.2 10.11 4320 22 7.02
227.73 0.708 7.41 1.11 0.453 -0.609 1.36 -- 0.481 22.8 3.157 4343 22.1 7.25
204.15 0.665 8.09 3.65 0.588 -7.9 -- -20.3 0.652 23.2 10.11 4320 22 7.05
230.3 0.707 7.41 1.1 0.513 -0.666 -- -- 0.488 20.2 1.804 4349 22.1 7.23
205.07 0.667 8.06 3.78 -- -7.78 -- -20.3 0.675 -- 10.31 4319 22.1 7.05
247.35 0.737 7.41 1.09 0.238 -- 1.69 -- 0.473 19.8 -- -- -- --
252.36 0.744 7.41 1.05 0.346 -- -- -- 0.48 17 -- -- -- --
229.23 0.705 7.41 1.13 -- -0.674 -- -- 0.493 -- 1.17 4357 22.1 7.24
250 0.736 7.4 -- 0.561 -1.29 -- -- 0.485 19.1 0.1389 4374 22.3 8.42
258.65 0.751 7.4 1.04 -- -- -- -- 0.472 -- -- -- -- --
281.56 0.785 7.43 -- 0.327 -- -- -- 0.363 17.1 -- -- -- --
233.81 0.712 7.44 -- -- -1.88 -- -- 0.444 -- 0.18 4390 23.2 11.7
287.18 0.791 7.43 -- -- -- -- -- 0.356 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 170.28 radiation 10 4320 < th dose dependent rect. 22 7
2 174.34 radiation 10 4320 < th dose dependent rect. 19 10
4 174.55 radiation 30 14400 < th dose dependent rect. 22 7
8 177.11 radiation 30 14400 < th dose dependent rect. 19 10
17 181.79 humidity 90 14400 > th dose dependent rect. 5 2
19 182.31 radiation 20 14400 < th dose dependent rect. 24 5
24 183.02 radiation 1 4320 < th dose independent rect. 22 7
29 184.04 temperature 20 1440 > th dose independent rect. 6 1
30 184.40 temperature 20 1440 < th dose independent rect. 5 2
32 184.59 radiation 1 4320 < th dose independent rect. 19 10
37 185.06 humidity 90 14400 > th dose dependent rect. 4 5
47 186.07 radiation 1 14400 > th dose independent rect. 18 11
54 187.26 wind 1 43200 < th dose dependent rect. 11 1
55 187.29 humidity 90 14400 > th dose dependent rect. 3 11
58 187.46 wind 3 43200 < th dose dependent rect. 6 20
71 187.90 radiation 10 14400 < th dose dependent rect. 2 3
73 187.95 wind 3 43200 < th dose dependent rect. 10 4
84 188.16 humidity 90 14400 > th dose dependent sin 4 NA
111 188.79 humidity 90 14400 > th dose dependent rect. 24 18
113 188.86 wind 3 43200 < th dose independent rect. 12 15
123 188.96 wind 3 43200 < th dose dependent rect. 17 9
128 189.00 wind 1 43200 > th dose independent rect. 7 5
129 189.00 wind 3 43200 < th dose dependent rect. 24 2
134 189.03 wind 3 43200 < th dose dependent rect. 10 21
140 189.08 wind 3 43200 > th dose independent rect. 13 14
141 189.08 wind 3 43200 < th dose dependent rect. 6 12
151 189.13 wind 3 43200 < th dose dependent sin 15 NA
157 189.18 wind 3 43200 < th dose dependent rect. 21 5
158 189.19 wind 1 43200 < th dose independent rect. 11 1
165 189.23 wind 3 43200 < th dose dependent sin 22 NA
204 189.42 wind 1 43200 > th dose independent rect. 6 7
243 189.62 wind 3 43200 < th dose independent sin 16 NA
264 189.73 wind 3 43200 < th dose dependent no NA NA
267 189.74 wind 3 43200 < th dose dependent rect. 19 23
272 189.77 atmosphere 1015 43200 < th dose independent rect. 12 10
276 189.78 wind 3 43200 < th dose dependent rect. 13 23
290 189.83 humidity 90 14400 > th dose dependent rect. 11 22
295 189.85 wind 3 43200 < th dose dependent rect. 17 23
296 189.86 atmosphere 995 43200 > th dose independent rect. 12 9
301 189.88 atmosphere 1015 43200 < th dose independent rect. 12 5
307 189.90 atmosphere 1015 43200 > th dose independent rect. 13 2
308 189.90 atmosphere 1015 43200 > th dose independent rect. 12 4
312 189.91 atmosphere 1015 43200 < th dose independent rect. 13 3
313 189.91 atmosphere 995 43200 > th dose independent rect. 12 7
316 189.92 atmosphere 995 43200 < th dose independent rect. 13 5
321 189.93 wind 5 43200 < th dose independent rect. 8 1
338 189.96 wind 3 43200 < th dose dependent rect. 22 23
344 189.98 atmosphere 1015 43200 < th dose independent rect. 14 1
351 189.99 humidity 90 14400 > th dose dependent rect. 3 23
356 190.01 wind 1 43200 > th dose independent rect. 11 1
357 190.01 atmosphere 995 43200 > th dose independent rect. 13 4
362 190.01 atmosphere 1015 43200 < th dose independent rect. 12 13
363 190.01 humidity 90 14400 > th dose independent rect. 22 16
368 190.02 wind 3 43200 > th dose independent sin 16 NA
379 190.03 humidity 90 14400 > th dose independent rect. 20 16
383 190.04 atmosphere 995 43200 > th dose independent rect. 14 1
390 190.05 humidity 90 14400 > th dose independent sin 6 NA
433 190.12 humidity 90 14400 > th dose dependent no NA NA
497 190.23 atmosphere 1015 43200 < th dose independent rect. 16 6
510 190.25 atmosphere 1015 43200 > th dose independent rect. 12 11
515 190.26 atmosphere 1015 43200 < th dose independent sin 17 NA
532 190.28 atmosphere 1015 43200 > th dose independent rect. 12 13
551 190.31 humidity 90 14400 > th dose independent rect. 5 2
626 190.42 atmosphere 995 43200 < th dose independent rect. 14 2
631 190.42 wind 5 43200 > th dose dependent rect. 8 1
639 190.44 atmosphere 1015 43200 < th dose independent rect. 24 1
661 190.46 humidity 90 14400 > th dose dependent rect. 5 23
677 190.49 atmosphere 1015 43200 > th dose independent rect. 12 17
686 190.51 atmosphere 1015 43200 > th dose independent sin 17 NA
712 190.53 wind 5 43200 > th dose independent rect. 8 1
783 190.62 atmosphere 1015 43200 > th dose independent rect. 16 9
961 190.79 atmosphere 1015 43200 > th dose independent rect. 23 2
981 190.81 atmosphere 1015 43200 > th dose independent rect. 4 20