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Os07g0130600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Resistance protein candidate (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.77 (0.0413) R2 : 0.638
β1 : 2.63 (0.151) R2dD : 0.249 R2D : 0.12
β2 : 2.07 (0.0999) R2dC : 0.342 R2C : 0.278
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.15 (0.0882) R2dN8 : 0.182 R2N8 : 0.0601
σ : 0.777
deviance : 275.3
__
_____
C
peak time of C : 13.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
253.1 0.747 6.38 4.9 2.03 -13.3 -0.461 71.9 1.13 13.8 999.8 734 -- --
265.65 0.765 6.78 2.72 2.07 -1.04 -0.477 -- 1.12 13.8 999.8 734 -- --
253.79 0.742 6.38 4.88 2.03 -13.5 -- 72.8 1.13 13.9 999.7 733 -- --
261.05 0.753 6.78 2.71 2.01 -1.54 -- -- 1.15 13.7 996.2 713 -- --
502.54 1.04 6.38 4.94 -- -13.7 -- 73.1 1.07 -- 1000 685 -- --
274.37 0.777 6.77 2.64 2.07 -- -0.491 -- 1.15 13.8 -- -- -- --
275.3 0.777 6.77 2.63 2.07 -- -- -- 1.15 13.9 -- -- -- --
509.33 1.05 6.8 2.62 -- -2.2 -- -- 1.07 -- 996 720 -- --
444.2 0.982 6.86 -- 1.94 -1.58 -- -- 0.838 13.8 995.9 3474 -- --
534.36 1.08 6.8 2.54 -- -- -- -- 1.1 -- -- -- -- --
457.47 1 6.84 -- 2.02 -- -- -- 0.859 13.8 -- -- -- --
690.22 1.22 6.82 -- -- -1.69 -- -- 0.835 -- 995.9 723 -- --
705.07 1.24 6.86 -- -- -- -- -- 0.822 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 242.62 atmosphere 995 720 > th dose independent rect. 9 7
2 243.52 atmosphere 995 720 > th dose independent rect. 4 17
3 243.65 atmosphere 995 720 > th dose independent rect. 14 17
4 244.02 atmosphere 995 720 > th dose independent rect. 18 23
6 244.66 humidity 70 720 > th dose independent rect. 18 14
8 245.11 atmosphere 995 720 > th dose independent rect. 4 19
10 245.25 atmosphere 995 720 > th dose independent rect. 9 23
16 245.99 atmosphere 995 720 > th dose independent rect. 11 6
18 246.51 atmosphere 995 14400 > th dose independent rect. 7 12
19 246.55 humidity 70 1440 > th dose independent rect. 17 3
21 246.56 humidity 70 1440 > th dose independent rect. 17 10
22 246.58 humidity 70 1440 > th dose independent rect. 17 5
26 246.60 humidity 70 1440 > th dose independent rect. 17 7
33 246.67 atmosphere 995 14400 > th dose independent rect. 17 1
34 246.71 atmosphere 995 14400 < th dose independent rect. 18 1
37 246.71 atmosphere 995 14400 < th dose dependent rect. 18 1
46 247.32 atmosphere 995 14400 > th dose independent rect. 7 8
52 247.43 atmosphere 995 14400 < th dose independent rect. 15 4
68 247.67 humidity 60 720 > th dose dependent rect. 20 1
75 247.79 atmosphere 995 14400 > th dose independent rect. 12 7
77 247.81 atmosphere 995 14400 > th dose independent rect. 10 9
119 248.03 atmosphere 995 720 > th dose independent rect. 4 21
127 248.19 humidity 70 1440 < th dose independent rect. 17 1
130 248.23 atmosphere 995 720 > th dose independent rect. 13 10
135 248.27 atmosphere 995 720 > th dose independent rect. 11 14
136 248.28 atmosphere 995 720 > th dose independent rect. 4 13
170 248.82 humidity 80 720 > th dose independent rect. 20 1
216 249.29 atmosphere 995 720 > th dose independent rect. 11 12
281 250.07 atmosphere 995 1440 > th dose independent rect. 6 11
300 250.37 wind 1 4320 > th dose independent rect. 10 1
308 250.58 humidity 70 1440 < th dose dependent rect. 15 1
324 250.74 atmosphere 995 720 > th dose independent rect. 11 10
332 250.88 atmosphere 995 1440 > th dose independent sin 9 NA
333 250.89 wind 1 4320 < th dose independent rect. 10 1
369 251.41 atmosphere 995 720 > th dose independent rect. 11 21
383 251.57 temperature 30 720 < th dose independent rect. 18 14
407 251.81 atmosphere 1005 14400 > th dose independent rect. 22 1
415 251.98 atmosphere 995 720 > th dose independent rect. 1 15
422 252.18 atmosphere 1000 720 < th dose dependent rect. 8 16
426 252.30 humidity 60 1440 > th dose independent rect. 15 1
429 252.31 humidity 70 1440 > th dose independent sin 13 NA
431 252.32 atmosphere 1015 720 < th dose dependent rect. 17 2
439 252.40 atmosphere 1000 270 < th dose dependent sin 15 NA
443 252.47 atmosphere 995 720 > th dose independent rect. 14 2
449 252.56 atmosphere 995 720 > th dose independent sin 15 NA
450 252.56 humidity 80 1440 < th dose dependent rect. 18 2
452 252.58 atmosphere 995 1440 > th dose independent sin 2 NA
457 252.63 humidity 80 1440 < th dose dependent rect. 15 6
460 252.65 atmosphere 995 720 > th dose independent rect. 13 4
481 252.85 atmosphere 1005 14400 < th dose independent rect. 22 1
512 252.99 atmosphere 995 720 > th dose independent sin 18 NA
537 253.13 atmosphere 1000 270 < th dose dependent rect. 15 12
540 253.15 humidity 70 1440 < th dose independent sin 13 NA
553 253.19 atmosphere 1005 14400 < th dose independent rect. 21 3
558 253.21 atmosphere 1000 720 < th dose dependent sin 20 NA
588 253.37 atmosphere 1000 720 < th dose independent rect. 12 1
593 253.38 atmosphere 1005 14400 < th dose independent rect. 19 5
611 253.47 temperature 30 1440 > th dose dependent rect. 15 1
616 253.49 atmosphere 1000 720 < th dose dependent rect. 12 2
624 253.55 wind 1 4320 < th dose dependent rect. 10 1
642 253.66 humidity 50 1440 > th dose independent rect. 13 1
652 253.70 humidity 50 720 > th dose dependent rect. 19 4
686 253.80 atmosphere 995 720 > th dose independent rect. 21 23
806 254.40 atmosphere 1000 720 < th dose dependent rect. 18 23
808 254.41 atmosphere 1000 720 < th dose dependent no NA NA
819 254.46 temperature 30 720 < th dose independent rect. 6 22
905 254.70 atmosphere 1000 720 > th dose independent rect. 20 1
933 254.74 atmosphere 1005 14400 < th dose independent rect. 19 15
937 254.75 atmosphere 1000 720 < th dose dependent rect. 18 1
939 254.75 temperature 30 720 > th dose dependent rect. 17 17
941 254.75 atmosphere 1000 720 < th dose dependent rect. 15 23
993 254.87 temperature 30 1440 > th dose dependent rect. 15 4