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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0130400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Lectin-like receptor kinase 7;2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0213) R2 : 0.0953
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.312 (0.0449) R2dN8 : 0.123 R2N8 : 0.0953
σ : 0.402
deviance : 74.18
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
69.31 0.391 3.01 0.0567 0.184 -0.275 0.201 1.18 0.316 11.9 1.144 16 -- --
70.44 0.391 2.99 0.102 0.192 -0.185 0.24 -- 0.332 12.1 1.399 17 -- --
69.47 0.388 3.01 0.0635 0.183 -0.266 -- 1.23 0.316 11.6 1.123 16 -- --
70.81 0.392 2.99 0.111 0.188 -0.168 -- -- 0.336 11.5 1.303 15 -- --
71.53 0.394 3.01 0.0642 -- -0.237 -- 1.25 0.311 -- 1.199 16 -- --
71.6 0.397 2.99 0.138 0.177 -- 0.182 -- 0.328 10.6 -- -- -- --
71.71 0.397 2.99 0.145 0.179 -- -- -- 0.328 10.1 -- -- -- --
72.95 0.398 3 0.117 -- -0.135 -- -- 0.332 -- 1.267 15 -- --
71.13 0.393 2.99 -- 0.189 -0.186 -- -- 0.325 11.7 1.314 15 -- --
73.64 0.401 3 0.142 -- -- -- -- 0.327 -- -- -- -- --
72.26 0.398 3 -- 0.178 -- -- -- 0.311 10 -- -- -- --
73.28 0.399 3 -- -- -0.148 -- -- 0.32 -- 1.317 17 -- --
74.18 0.402 3 -- -- -- -- -- 0.312 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 63.16 temperature 20.0 30 > th dose dependent rect. 2 1
2 63.18 atmosphere 1005.0 30 > th dose dependent rect. 2 1
4 63.21 temperature 20.0 30 > th dose independent rect. 2 1
6 63.22 atmosphere 1005.0 30 > th dose independent rect. 2 1
10 63.28 wind 5.0 30 < th dose dependent rect. 2 1
12 63.29 wind 3.0 30 < th dose independent rect. 2 1
18 63.34 temperature 10.0 30 > th dose independent rect. 2 1
20 63.34 temperature 30.0 30 < th dose independent rect. 2 1
21 63.34 humidity 50.0 30 > th dose independent rect. 2 1
26 63.34 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 63.34 radiation 1.0 30 < th dose independent rect. 2 1
33 63.34 precipitation 0.1 30 < th dose independent rect. 2 1
34 63.34 temperature 10.0 30 > th dose independent rect. 3 23
35 63.34 radiation 1.0 30 < th dose dependent rect. 2 1
40 63.34 precipitation 0.1 30 < th dose dependent rect. 2 1
41 63.35 humidity 50.0 30 > th dose dependent rect. 2 1
48 63.65 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 63.78 temperature 30.0 30 < th dose dependent rect. 2 1
53 64.05 wind 1.0 30 > th dose independent rect. 2 1
99 65.08 radiation 1.0 4320 < th dose dependent rect. 3 1
104 65.33 wind 9.0 1440 < th dose independent rect. 3 1
105 65.33 temperature 10.0 1440 > th dose independent rect. 3 1
108 65.33 temperature 30.0 1440 < th dose independent rect. 3 1
112 65.33 humidity 50.0 1440 > th dose independent rect. 3 1
121 65.33 atmosphere 995.0 1440 > th dose independent rect. 3 1
122 65.33 radiation 1.0 1440 < th dose independent rect. 3 1
142 65.33 temperature 10.0 1440 > th dose independent rect. 4 23
160 65.83 wind 9.0 30 < th dose independent rect. 3 23
164 66.24 atmosphere 995.0 30 > th dose independent rect. 3 23
167 66.38 precipitation 0.1 30 < th dose independent rect. 3 23
168 66.38 precipitation 0.1 30 < th dose dependent rect. 3 23
185 67.41 humidity 50.0 30 > th dose independent rect. 3 23
203 68.22 radiation 10.0 30 < th dose dependent rect. 3 23
209 68.44 temperature 30.0 30 < th dose independent rect. 3 23
235 68.55 radiation 1.0 30 < th dose independent rect. 3 23
249 68.80 wind 1.0 10 > th dose independent rect. 18 12
278 69.17 wind 3.0 30 < th dose dependent rect. 2 7
283 69.20 wind 3.0 30 < th dose dependent rect. 2 5
284 69.21 wind 1.0 30 > th dose independent rect. 3 23
293 69.29 wind 1.0 10 > th dose independent sin 12 NA
309 69.35 humidity 90.0 90 < th dose independent rect. 2 1
312 69.36 temperature 25.0 4320 > th dose independent rect. 1 2
315 69.37 wind 3.0 10 < th dose dependent rect. 21 6
326 69.41 wind 3.0 10 < th dose dependent rect. 15 12
329 69.43 wind 1.0 30 < th dose independent rect. 15 12
333 69.44 temperature 25.0 10 > th dose independent rect. 18 11
338 69.44 radiation 10.0 10 < th dose dependent rect. 17 9
344 69.46 temperature 10.0 720 > th dose independent rect. 7 8
345 69.46 atmosphere 1015.0 720 < th dose independent rect. 7 8
346 69.46 radiation 10.0 30 < th dose independent rect. 17 9
347 69.46 wind 1.0 30 < th dose independent rect. 17 10
349 69.46 temperature 10.0 720 > th dose independent rect. 15 16
355 69.46 radiation 1.0 4320 < th dose dependent rect. 19 8
356 69.47 wind 1.0 30 < th dose independent rect. 22 5
360 69.47 temperature 10.0 10 > th dose dependent rect. 18 8
361 69.47 wind 3.0 30 < th dose dependent rect. 2 14
368 69.48 wind 9.0 720 < th dose independent rect. 19 8
380 69.50 temperature 25.0 720 > th dose independent rect. 21 1
382 69.50 atmosphere 1005.0 10 > th dose dependent rect. 2 5
386 69.51 temperature 25.0 4320 > th dose dependent rect. 1 1
396 69.52 temperature 25.0 10 > th dose dependent rect. 18 11
403 69.54 temperature 10.0 1440 > th dose independent rect. 18 9
406 69.54 humidity 50.0 1440 > th dose independent rect. 18 9
408 69.54 radiation 20.0 1440 < th dose independent rect. 18 9
420 69.54 temperature 10.0 1440 > th dose independent rect. 3 15
425 69.54 wind 3.0 30 < th dose dependent rect. 2 12
430 69.55 temperature 30.0 720 < th dose independent rect. 19 8
432 69.55 atmosphere 995.0 720 > th dose independent rect. 19 8
433 69.55 radiation 1.0 720 < th dose independent rect. 19 8
440 69.55 atmosphere 1015.0 30 < th dose independent rect. 3 23
441 69.55 radiation 1.0 720 < th dose dependent rect. 19 8
449 69.56 precipitation 0.1 720 < th dose independent rect. 7 8
450 69.56 humidity 50.0 30 > th dose independent rect. 17 9
453 69.56 temperature 25.0 10 > th dose dependent rect. 18 8
455 69.56 precipitation 0.1 720 < th dose dependent rect. 7 8
461 69.57 atmosphere 1005.0 10 > th dose dependent rect. 2 7
465 69.58 temperature 25.0 4320 < th dose independent rect. 1 1
471 69.58 temperature 20.0 30 > th dose dependent rect. 2 7
478 69.59 temperature 25.0 10 > th dose independent rect. 18 7
484 69.59 temperature 10.0 90 > th dose dependent rect. 1 16
498 69.62 wind 1.0 10 < th dose independent rect. 2 7
502 69.62 wind 1.0 10 > th dose independent rect. 7 23
506 69.63 wind 1.0 10 < th dose independent rect. 2 5
516 69.63 wind 3.0 10 < th dose dependent rect. 21 12
530 69.65 wind 3.0 10 < th dose dependent rect. 11 22
536 69.66 atmosphere 1015.0 720 < th dose independent rect. 3 16
540 69.66 wind 3.0 30 < th dose dependent rect. 2 10
542 69.66 radiation 10.0 30 < th dose dependent rect. 9 17
550 69.67 temperature 15.0 720 > th dose dependent rect. 5 2
554 69.67 wind 3.0 30 < th dose dependent rect. 2 21
560 69.68 wind 3.0 10 < th dose dependent sin 11 NA
564 69.68 wind 3.0 10 < th dose dependent rect. 15 18
568 69.69 wind 9.0 10 < th dose independent rect. 17 9
571 69.69 atmosphere 1000.0 30 > th dose independent rect. 17 9
573 69.69 precipitation 0.1 30 < th dose independent rect. 17 9
574 69.69 wind 1.0 10 > th dose independent rect. 17 23
576 69.69 precipitation 0.1 30 < th dose dependent rect. 17 9
578 69.69 temperature 10.0 10 > th dose dependent rect. 2 16
583 69.70 temperature 30.0 10 < th dose independent rect. 17 9
586 69.70 atmosphere 1000.0 30 > th dose independent rect. 2 15
587 69.70 precipitation 0.1 30 < th dose independent rect. 2 15
596 69.70 atmosphere 995.0 30 > th dose dependent rect. 17 9
598 69.70 precipitation 0.1 30 < th dose dependent rect. 2 15
600 69.70 wind 3.0 30 < th dose dependent rect. 6 21
604 69.71 temperature 10.0 30 > th dose independent rect. 17 9
611 69.71 wind 9.0 30 < th dose independent rect. 2 15
612 69.71 temperature 10.0 30 > th dose independent rect. 2 15
615 69.71 atmosphere 1015.0 30 < th dose independent rect. 2 15
641 69.72 wind 9.0 720 < th dose independent rect. 15 16
642 69.72 radiation 40.0 720 < th dose independent rect. 15 16
653 69.72 atmosphere 995.0 10 > th dose dependent rect. 2 16
725 69.77 humidity 90.0 90 < th dose independent rect. 17 8
782 69.80 wind 1.0 90 > th dose independent rect. 17 8
803 69.81 wind 1.0 10 > th dose independent rect. 18 8
811 69.81 humidity 90.0 10 < th dose independent rect. 18 11
815 69.81 radiation 10.0 30 < th dose independent rect. 9 17
844 69.83 temperature 25.0 90 > th dose independent rect. 17 4
887 69.84 precipitation 0.1 720 < th dose independent rect. 19 8
902 69.84 precipitation 0.1 720 < th dose dependent rect. 19 8
908 69.85 humidity 90.0 10 < th dose independent rect. 18 8
934 69.86 atmosphere 995.0 720 > th dose independent rect. 7 8
952 69.86 wind 9.0 30 < th dose dependent rect. 2 15
975 69.88 temperature 25.0 720 > th dose dependent rect. 21 1
997 69.89 temperature 20.0 720 > th dose independent rect. 5 2
999 69.89 temperature 10.0 720 > th dose independent rect. 5 8