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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0130300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Resistance protein candidate (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.88 (0.026) R2 : 0.0258
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.19 (0.0548) R2dN8 : 0.0333 R2N8 : 0.0258
σ : 0.49
deviance : 110.25
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
103.95 0.479 2.89 -0.166 0.0811 0.848 0.221 2.55 0.175 10.9 1015 681 -- --
107.03 0.486 2.88 -0.13 0.0749 0.818 0.108 -- 0.185 10.6 1015 681 -- --
104.14 0.475 2.89 -0.157 0.0805 0.831 -- 2.48 0.176 10.6 1015 705 -- --
107.08 0.485 2.88 -0.126 0.0744 0.816 -- -- 0.186 10.5 1015 705 -- --
104.54 0.476 2.89 -0.158 -- 0.801 -- 2.43 0.175 -- 1015 691 -- --
109.63 0.491 2.89 -0.131 0.05 -- 0.099 -- 0.176 10.1 -- -- -- --
109.67 0.49 2.89 -0.127 0.0498 -- -- -- 0.176 9.84 -- -- -- --
107.41 0.485 2.89 -0.127 -- 0.78 -- -- 0.185 -- 1015 413 -- --
107.5 0.486 2.88 -- 0.0753 0.818 -- -- 0.2 10.7 1015 705 -- --
109.82 0.49 2.89 -0.128 -- -- -- -- 0.176 -- -- -- -- --
110.1 0.491 2.88 -- 0.0503 -- -- -- 0.19 10 -- -- -- --
107.84 0.485 2.88 -- -- 0.78 -- -- 0.199 -- 1015 210 -- --
110.25 0.49 2.88 -- -- -- -- -- 0.19 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 99.00 atmosphere 1015.0 1440 > th dose independent rect. 24 2
2 99.05 atmosphere 1015.0 1440 > th dose dependent rect. 24 1
3 99.28 temperature 15.0 30 > th dose independent rect. 13 23
23 100.74 temperature 10.0 1440 > th dose independent rect. 13 1
27 100.74 atmosphere 995.0 1440 > th dose independent rect. 13 1
30 100.74 temperature 10.0 1440 > th dose independent rect. 14 23
33 101.08 temperature 25.0 30 > th dose dependent rect. 12 1
37 101.36 humidity 80.0 30 < th dose independent rect. 12 1
38 101.37 temperature 20.0 30 > th dose independent rect. 12 1
39 101.39 wind 7.0 30 < th dose independent rect. 12 1
41 101.43 atmosphere 1010.0 30 < th dose independent rect. 12 1
45 101.48 radiation 20.0 30 > th dose independent rect. 12 1
46 101.49 humidity 60.0 30 > th dose independent rect. 12 1
47 101.49 wind 9.0 30 < th dose dependent rect. 12 1
49 101.51 radiation 40.0 30 > th dose independent rect. 12 1
50 101.55 radiation 1.0 30 > th dose dependent rect. 12 1
57 101.69 temperature 15.0 720 > th dose independent rect. 13 6
59 101.70 atmosphere 1015.0 30 < th dose dependent rect. 12 1
61 101.71 temperature 10.0 30 > th dose independent rect. 12 1
63 101.71 atmosphere 995.0 30 > th dose independent rect. 12 1
66 101.71 precipitation 0.1 30 < th dose independent rect. 12 1
68 101.71 precipitation 0.1 30 < th dose dependent rect. 12 1
69 101.72 wind 1.0 30 > th dose independent rect. 12 1
72 101.94 atmosphere 995.0 30 > th dose dependent rect. 12 1
74 101.99 humidity 50.0 30 > th dose dependent rect. 12 1
77 102.19 humidity 90.0 30 < th dose dependent rect. 12 1
79 102.34 temperature 30.0 30 < th dose independent rect. 12 1
81 102.38 wind 1.0 30 > th dose dependent rect. 12 1
83 102.42 temperature 20.0 90 < th dose dependent rect. 23 1
88 102.48 atmosphere 1010.0 270 < th dose independent rect. 14 12
93 102.60 atmosphere 1015.0 90 < th dose independent rect. 13 23
94 102.65 temperature 20.0 10 < th dose dependent rect. 24 1
97 102.67 atmosphere 1010.0 720 < th dose independent rect. 13 6
132 102.82 temperature 15.0 270 > th dose independent rect. 14 12
134 102.84 temperature 15.0 30 > th dose independent rect. 21 23
159 102.96 temperature 15.0 1440 > th dose independent rect. 13 12
214 103.22 temperature 15.0 720 > th dose independent rect. 15 10
215 103.23 atmosphere 1015.0 720 < th dose independent rect. 13 23
221 103.28 temperature 15.0 10 > th dose independent rect. 23 23
226 103.30 atmosphere 1015.0 720 < th dose independent rect. 7 18
228 103.32 temperature 20.0 90 < th dose dependent rect. 14 10
265 103.46 atmosphere 995.0 30 > th dose dependent rect. 12 12
275 103.49 temperature 15.0 30 > th dose independent rect. 7 23
278 103.50 atmosphere 1015.0 1440 < th dose independent rect. 23 5
295 103.55 atmosphere 1015.0 1440 < th dose independent rect. 23 11
296 103.55 atmosphere 1015.0 720 < th dose independent rect. 21 15
300 103.56 atmosphere 1015.0 1440 < th dose independent rect. 23 8
355 103.69 atmosphere 1015.0 720 < th dose independent rect. 3 23
361 103.71 atmosphere 1010.0 270 > th dose independent rect. 22 2
363 103.71 atmosphere 1010.0 270 > th dose independent rect. 19 4
380 103.71 atmosphere 1015.0 720 < th dose independent rect. 20 23
382 103.72 atmosphere 1010.0 270 > th dose independent rect. 20 2
521 103.73 atmosphere 1015.0 720 < th dose independent rect. 11 15
543 103.75 atmosphere 1010.0 90 < th dose independent sin 13 NA
584 103.81 atmosphere 1010.0 90 > th dose independent sin 13 NA
585 103.81 wind 3.0 720 > th dose independent rect. 12 1
588 103.81 atmosphere 995.0 30 > th dose independent rect. 13 23
590 103.82 atmosphere 995.0 720 > th dose dependent rect. 12 1
625 103.87 temperature 15.0 30 > th dose independent rect. 11 23
643 103.90 atmosphere 1015.0 720 < th dose independent rect. 15 18
652 103.92 temperature 15.0 30 > th dose independent rect. 9 23
672 103.94 atmosphere 1015.0 1440 < th dose independent rect. 23 1
676 103.94 temperature 15.0 720 > th dose independent rect. 7 18
682 103.95 atmosphere 1015.0 720 > th dose dependent rect. 3 22
685 103.96 temperature 15.0 1440 > th dose independent rect. 8 15
686 103.96 atmosphere 1015.0 720 > th dose independent rect. 2 20
687 103.96 atmosphere 1015.0 720 > th dose dependent sin 17 NA
710 103.96 atmosphere 1015.0 720 > th dose dependent rect. 1 23
711 103.97 atmosphere 1015.0 720 < th dose independent sin 0 NA
718 103.98 atmosphere 1015.0 720 > th dose independent rect. 23 23
738 103.99 atmosphere 1015.0 720 > th dose independent sin 12 NA
742 103.99 atmosphere 1015.0 720 > th dose independent no NA NA
744 103.99 precipitation 0.1 1440 < th dose independent rect. 12 1
881 103.99 atmosphere 1015.0 720 > th dose independent rect. 1 23
901 103.99 precipitation 0.1 1440 < th dose dependent rect. 12 1
904 104.00 atmosphere 1015.0 720 > th dose independent sin 10 NA
907 104.00 atmosphere 1015.0 720 > th dose independent sin 0 NA
908 104.00 atmosphere 1015.0 720 < th dose independent sin 11 NA
912 104.00 atmosphere 1015.0 720 < th dose independent no NA NA
929 104.00 atmosphere 1015.0 720 < th dose independent rect. 9 16