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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0130200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Resistance protein candidate (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.48 (0.0422) R2 : 0.347
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.53 (0.1) R2dE : 0.334 R2E : 0.335
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.224 (0.0888) R2dN8 : 0.0118 R2N8 : 0.0125
σ : 0.792
deviance : 289.17
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1001
memory length : 137
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11.2
open length of G : 7.01

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
274.02 0.778 3.49 0.234 0.751 1.04 1.17 0.268 0.239 16 1001 71 11.8 6.17
274.08 0.771 3.49 0.245 0.734 1.05 1.29 -- 0.239 16.1 1001 73 11.8 6.22
275.94 0.774 3.49 0.249 0.747 1.05 -- 0.999 0.246 16 1001 72 11.8 6.27
279.36 0.778 3.48 0.244 0.75 1.02 -- -- 0.252 16 1001 68 11.8 6.32
285.02 0.786 3.48 0.211 -- 1.56 -- 1.08 0.205 -- 1001 128 11.4 6.82
310.11 0.826 3.48 0.198 1.5 -- 0.973 -- 0.317 16.1 -- -- -- --
312.8 0.828 3.48 0.209 1.51 -- -- -- 0.322 16.1 -- -- -- --
287.67 0.79 3.49 0.247 -- 1.57 -- -- 0.237 -- 1001 138 11.2 7
280.94 0.781 3.49 -- 0.759 1.01 -- -- 0.218 16 1001 68 11.8 6.33
436.49 0.976 3.47 0.148 -- -- -- -- 0.282 -- -- -- -- --
313.96 0.829 3.48 -- 1.5 -- -- -- 0.299 16.1 -- -- -- --
289.17 0.792 3.48 -- -- 1.53 -- -- 0.224 -- 1001 137 11.2 7.01
437.07 0.976 3.47 -- -- -- -- -- 0.265 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 277.02 atmosphere 1000.0 90 > th dose independent rect. 12 6
11 280.71 temperature 10.0 1440 > th dose independent rect. 13 6
15 280.71 temperature 10.0 1440 > th dose independent rect. 19 18
18 280.71 atmosphere 995.0 1440 > th dose independent rect. 19 18
19 281.11 radiation 1.0 1440 < th dose dependent rect. 19 7
20 281.15 temperature 20.0 90 > th dose independent rect. 12 6
25 281.73 wind 1.0 270 > th dose independent rect. 17 18
26 281.74 temperature 30.0 30 < th dose independent rect. 18 7
30 281.81 temperature 10.0 1440 > th dose independent rect. 19 7
33 281.81 temperature 30.0 1440 < th dose independent rect. 19 7
37 281.81 humidity 50.0 1440 > th dose independent rect. 19 7
39 281.81 atmosphere 995.0 1440 > th dose independent rect. 19 7
40 281.81 radiation 1.0 1440 < th dose independent rect. 19 7
60 281.81 temperature 10.0 1440 > th dose independent rect. 2 17
69 282.26 wind 1.0 90 > th dose independent rect. 12 6
70 282.27 precipitation 0.1 90 < th dose independent rect. 12 6
71 282.27 precipitation 0.1 90 < th dose dependent rect. 12 6
72 282.29 atmosphere 995.0 30 > th dose independent rect. 1 17
75 282.39 radiation 1.0 30 < th dose dependent rect. 18 7
76 282.40 humidity 60.0 30 > th dose independent rect. 18 7
78 282.58 wind 9.0 30 < th dose independent rect. 1 17
79 282.59 temperature 10.0 90 > th dose dependent rect. 12 6
80 282.61 wind 1.0 270 > th dose independent rect. 5 7
81 282.63 temperature 10.0 90 > th dose dependent rect. 1 17
88 282.86 wind 9.0 30 < th dose independent rect. 12 6
89 282.86 radiation 1.0 30 < th dose independent rect. 18 7
92 282.90 wind 1.0 270 > th dose independent rect. 3 9
93 282.90 precipitation 0.1 90 < th dose independent rect. 1 17
94 282.90 wind 1.0 270 > th dose independent rect. 16 20
96 282.90 precipitation 0.1 90 < th dose dependent rect. 1 17
102 283.10 temperature 30.0 90 < th dose independent rect. 18 18
103 283.11 atmosphere 1015.0 30 < th dose independent rect. 18 7
105 283.14 temperature 10.0 90 > th dose independent rect. 12 6
107 283.14 atmosphere 1015.0 90 < th dose independent rect. 12 6
108 283.14 temperature 10.0 90 > th dose independent rect. 18 18
109 283.14 atmosphere 995.0 90 > th dose independent rect. 18 18
118 283.32 wind 9.0 90 < th dose independent rect. 18 18
125 283.34 radiation 20.0 10 < th dose dependent rect. 1 17
127 283.36 atmosphere 995.0 30 > th dose dependent rect. 12 6
129 283.39 wind 9.0 30 < th dose independent rect. 18 7
140 283.58 temperature 10.0 30 > th dose independent rect. 18 7
142 283.58 radiation 20.0 30 < th dose independent rect. 18 7
145 283.58 temperature 10.0 30 > th dose independent rect. 1 17
147 283.58 atmosphere 1015.0 30 < th dose independent rect. 1 17
150 283.62 atmosphere 995.0 30 > th dose independent rect. 18 7
156 283.71 humidity 50.0 90 > th dose independent rect. 18 18
161 283.80 atmosphere 1015.0 90 < th dose independent rect. 18 18
180 284.05 radiation 10.0 10 < th dose independent rect. 1 17
216 284.26 radiation 40.0 90 < th dose independent rect. 12 6
219 284.27 precipitation 0.1 270 < th dose independent rect. 12 17
221 284.27 precipitation 0.1 270 < th dose dependent rect. 12 17
246 284.43 temperature 20.0 270 > th dose dependent rect. 24 18
267 284.71 wind 1.0 30 > th dose independent rect. 18 7
272 284.78 humidity 50.0 270 > th dose dependent rect. 21 10
274 284.80 precipitation 0.1 30 < th dose independent rect. 18 18
277 284.80 precipitation 0.1 30 < th dose dependent rect. 18 18
296 285.01 precipitation 0.1 10 < th dose independent rect. 18 7
297 285.01 atmosphere 1015.0 270 < th dose independent rect. 7 15
299 285.01 precipitation 0.1 10 < th dose dependent rect. 18 7
366 285.54 precipitation 0.1 270 < th dose independent rect. 22 9
368 285.54 precipitation 0.1 270 < th dose dependent rect. 22 9
383 285.64 radiation 30.0 270 < th dose independent rect. 18 16
387 285.69 wind 1.0 43200 > th dose independent rect. 8 1
388 285.69 humidity 70.0 270 > th dose independent rect. 22 9
389 285.69 radiation 20.0 270 < th dose independent rect. 22 9
396 285.71 temperature 10.0 270 > th dose dependent rect. 22 20
399 285.73 atmosphere 995.0 30 > th dose dependent rect. 18 7
410 285.86 atmosphere 995.0 270 > th dose independent rect. 12 17
417 285.92 wind 9.0 270 < th dose independent rect. 22 9
418 285.92 temperature 10.0 270 > th dose independent rect. 22 9
419 285.92 temperature 30.0 270 < th dose independent rect. 22 9
420 285.92 humidity 50.0 270 > th dose independent rect. 22 9
422 285.92 atmosphere 995.0 270 > th dose independent rect. 22 9
424 285.92 temperature 10.0 270 > th dose independent rect. 7 15
433 285.98 temperature 10.0 30 > th dose dependent rect. 12 19
441 286.05 radiation 40.0 270 < th dose dependent rect. 22 9
457 286.18 radiation 40.0 270 < th dose independent rect. 17 18
478 286.32 atmosphere 995.0 270 > th dose independent rect. 1 15
482 286.35 temperature 10.0 270 > th dose independent rect. 5 7
483 286.35 humidity 50.0 270 > th dose independent rect. 5 7
484 286.35 atmosphere 995.0 270 > th dose independent rect. 5 7
485 286.35 atmosphere 1015.0 270 < th dose independent rect. 5 7
493 286.35 temperature 10.0 270 > th dose independent rect. 12 17
509 286.44 precipitation 0.1 270 < th dose independent rect. 5 7
511 286.44 precipitation 0.1 270 < th dose dependent rect. 5 7
515 286.47 wind 9.0 270 < th dose independent rect. 12 17
517 286.47 atmosphere 995.0 270 > th dose dependent rect. 12 4
521 286.52 radiation 40.0 10 < th dose independent rect. 13 5
551 286.73 wind 9.0 270 < th dose independent rect. 5 7
568 286.80 wind 9.0 270 < th dose independent rect. 7 15
570 286.81 wind 9.0 270 < th dose dependent rect. 22 9
598 286.98 wind 9.0 270 < th dose independent rect. 1 15
609 287.04 precipitation 0.1 270 < th dose independent rect. 1 15
610 287.04 precipitation 0.1 270 < th dose dependent rect. 1 15
615 287.07 radiation 1.0 270 > th dose independent rect. 11 8
629 287.11 humidity 90.0 30 < th dose independent rect. 12 6
635 287.16 humidity 90.0 30 < th dose independent rect. 18 18
677 287.33 wind 9.0 270 < th dose independent rect. 16 9
701 287.41 humidity 50.0 30 > th dose dependent rect. 18 7
706 287.43 radiation 1.0 30 < th dose dependent rect. 6 19
713 287.45 radiation 20.0 270 < th dose independent rect. 16 9
719 287.46 radiation 1.0 270 > th dose independent rect. 11 6
735 287.52 wind 1.0 270 > th dose independent rect. 6 16
758 287.61 wind 1.0 90 > th dose dependent rect. 12 6
762 287.64 temperature 10.0 270 > th dose independent rect. 16 9
763 287.64 radiation 40.0 270 < th dose independent rect. 16 9
764 287.64 temperature 10.0 270 > th dose independent rect. 1 15
765 287.64 atmosphere 1015.0 270 < th dose independent rect. 1 15
770 287.65 radiation 30.0 270 < th dose independent rect. 7 3
774 287.65 radiation 40.0 10 < th dose dependent rect. 13 5
814 287.75 temperature 10.0 270 > th dose dependent rect. 12 17
819 287.76 humidity 50.0 10 > th dose dependent rect. 1 17
820 287.77 atmosphere 1015.0 270 < th dose independent rect. 16 8
858 287.92 humidity 50.0 270 > th dose independent rect. 7 15
863 287.93 wind 1.0 43200 < th dose dependent rect. 8 3
889 288.05 radiation 40.0 43200 > th dose independent rect. 10 2
967 288.23 wind 3.0 14400 < th dose dependent rect. 9 1
986 288.33 radiation 1.0 270 < th dose dependent rect. 17 4