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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0130100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Resistance protein candidate (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.65 (0.0515) R2 : 0.556
β1 : 1.78 (0.188) R2dD : 0.0915 R2D : 0.0335
β2 : 2.78 (0.132) R2dC : 0.437 R2C : 0.402
β3 : 1.27 (0.186) R2dE : 0.0495 R2E : 0.000313
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.897 (0.114) R2dN8 : 0.0835 R2N8 : -0.00986
σ : 0.953
deviance : 418.73
__
_____
C
peak time of C : 16.8
E
wheather : radiation
threshold : 25.21
memory length : 1218
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11.2
open length of G : 2.25

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
403.76 0.944 4.64 1.88 2.78 1.35 1.13 -2.59 0.904 17 22.33 1349 11.2 1.13
418.48 0.953 4.64 1.78 2.77 1.27 1.16 -- 0.901 17 23.69 1335 11.2 1.16
407 0.94 4.64 1.89 2.78 1.36 -- -2.63 0.9 17 21.95 1349 11.2 1.13
418.73 0.953 4.65 1.78 2.78 1.27 -- -- 0.897 16.8 25.21 1218 11.2 2.25
628.99 1.17 4.53 1.6 -- 2.15 -- -1.38 0.837 -- 67.85 576 10.5 0.0333
454.01 0.999 4.72 1.61 2.8 -- 1.19 -- 0.624 17.1 -- -- -- --
457.62 1 4.71 1.61 2.8 -- -- -- 0.63 17.1 -- -- -- --
495.14 1.04 4.69 0.87 -- 3.12 -- -- 0.106 -- 127.9 441 9.52 7.48
498.43 1.04 4.68 -- 2.78 0.974 -- -- 0.618 16.9 24.06 1197 11.7 1.92
869.84 1.38 4.68 1.51 -- -- -- -- 0.559 -- -- -- -- --
526.33 1.07 4.75 -- 2.78 -- -- -- 0.45 17.1 -- -- -- --
521.58 1.06 4.71 -- -- 3.23 -- -- 0.465 -- 157.7 487 9.4 7.34
930.35 1.42 4.72 -- -- -- -- -- 0.391 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 411.23 radiation 20.0 1440 < th dose dependent rect. 11 1
2 412.85 radiation 1.0 1440 > th dose independent rect. 10 3
4 414.62 radiation 10.0 1440 > th dose independent rect. 11 1
10 416.98 radiation 1.0 1440 < th dose independent rect. 11 1
11 416.98 radiation 1.0 1440 < th dose dependent rect. 11 1
12 417.00 radiation 1.0 1440 < th dose independent rect. 9 3
13 417.00 radiation 1.0 1440 < th dose dependent rect. 9 3
17 417.78 radiation 20.0 1440 < th dose independent rect. 11 1
36 420.02 atmosphere 995.0 43200 > th dose independent rect. 13 9
46 420.41 atmosphere 995.0 43200 > th dose independent rect. 12 11
47 420.42 radiation 1.0 1440 < th dose independent rect. 13 1
48 420.42 radiation 1.0 1440 < th dose dependent rect. 13 1
57 420.82 atmosphere 995.0 43200 < th dose independent rect. 13 10
61 421.17 humidity 60.0 14400 < th dose independent rect. 6 1
63 421.17 humidity 60.0 14400 < th dose independent rect. 20 1
65 421.17 radiation 20.0 14400 > th dose independent rect. 17 1
116 421.17 humidity 60.0 14400 < th dose dependent rect. 6 1
118 421.17 humidity 60.0 14400 < th dose dependent rect. 20 1
120 421.17 radiation 20.0 14400 > th dose dependent rect. 17 1
178 421.71 radiation 1.0 1440 > th dose dependent rect. 11 1
203 422.36 humidity 60.0 14400 > th dose independent rect. 21 11
205 422.50 atmosphere 995.0 43200 > th dose independent sin 19 NA
206 422.52 atmosphere 1000.0 43200 < th dose dependent rect. 12 1
216 422.94 atmosphere 995.0 43200 < th dose independent rect. 11 13
226 423.17 atmosphere 995.0 43200 < th dose dependent rect. 15 7
229 423.29 humidity 60.0 14400 > th dose independent rect. 21 1
232 423.34 atmosphere 995.0 43200 < th dose independent sin 19 NA
250 424.01 wind 7.0 4320 > th dose independent rect. 16 3
265 424.59 wind 5.0 4320 > th dose dependent rect. 18 1
268 424.64 wind 7.0 4320 < th dose independent rect. 16 3
273 424.73 atmosphere 995.0 43200 > th dose independent rect. 13 6
285 424.95 atmosphere 995.0 43200 < th dose dependent rect. 14 9
298 425.26 atmosphere 1000.0 90 > th dose independent rect. 12 7
300 425.28 atmosphere 995.0 43200 > th dose independent rect. 14 3
302 425.33 atmosphere 995.0 43200 < th dose independent rect. 13 6
306 425.35 atmosphere 995.0 43200 < th dose independent rect. 14 4
319 425.56 atmosphere 995.0 43200 > th dose independent rect. 15 1
339 425.69 radiation 30.0 90 < th dose dependent rect. 23 19
340 425.70 humidity 60.0 14400 > th dose independent rect. 7 1
342 425.77 atmosphere 995.0 43200 < th dose independent rect. 15 1
352 425.86 radiation 20.0 90 < th dose independent rect. 23 19
362 426.03 temperature 20.0 1440 < th dose independent rect. 5 1
387 426.45 temperature 20.0 1440 > th dose independent rect. 5 2
398 426.60 atmosphere 995.0 43200 > th dose independent rect. 5 19
417 426.71 wind 3.0 90 > th dose independent rect. 12 7
422 426.77 radiation 1.0 1440 < th dose dependent rect. 15 1
424 426.78 atmosphere 995.0 43200 > th dose independent rect. 2 17
425 426.78 humidity 90.0 14400 > th dose dependent rect. 6 1
437 426.89 atmosphere 1000.0 30 > th dose independent rect. 12 21
478 427.28 atmosphere 995.0 43200 < th dose dependent rect. 13 11
493 427.47 atmosphere 995.0 43200 < th dose independent rect. 4 20
516 427.66 atmosphere 995.0 43200 < th dose independent rect. 2 17
522 427.71 wind 1.0 90 > th dose dependent rect. 12 7
529 427.79 radiation 40.0 270 < th dose dependent rect. 21 11
539 427.83 wind 1.0 90 < th dose dependent rect. 24 1
546 427.89 temperature 20.0 1440 > th dose independent rect. 3 1
574 428.08 humidity 60.0 14400 > th dose independent rect. 20 4
586 428.09 radiation 30.0 30 < th dose dependent rect. 1 17
590 428.10 humidity 50.0 10 > th dose dependent rect. 12 6
621 428.26 radiation 10.0 4320 < th dose dependent rect. 21 8
628 428.34 humidity 50.0 90 > th dose dependent rect. 23 10
635 428.40 humidity 70.0 10 > th dose independent rect. 1 17
651 428.49 wind 1.0 90 < th dose independent rect. 24 1
656 428.53 radiation 10.0 4320 < th dose dependent rect. 19 10
665 428.57 atmosphere 1000.0 43200 < th dose dependent sin 0 NA
666 428.58 radiation 20.0 30 < th dose independent rect. 1 17
673 428.65 atmosphere 1000.0 270 > th dose independent rect. 22 19
687 428.75 atmosphere 1000.0 270 > th dose independent rect. 21 21
706 428.94 atmosphere 1000.0 270 > th dose independent rect. 22 9
727 429.05 atmosphere 995.0 43200 < th dose dependent rect. 12 14
734 429.08 atmosphere 995.0 90 > th dose dependent rect. 12 7
737 429.10 temperature 20.0 1440 < th dose independent rect. 3 1
762 429.20 humidity 60.0 30 > th dose independent rect. 12 7
769 429.27 radiation 40.0 720 < th dose independent rect. 13 20
771 429.29 radiation 1.0 1440 > th dose independent rect. 4 1
783 429.29 radiation 1.0 1440 > th dose dependent rect. 4 1
816 429.40 radiation 40.0 90 < th dose dependent rect. 12 6
828 429.47 radiation 20.0 10 < th dose dependent rect. 11 7
843 429.51 humidity 50.0 90 > th dose dependent rect. 23 19
848 429.52 humidity 80.0 14400 > th dose dependent rect. 22 10
849 429.52 radiation 10.0 1440 < th dose dependent rect. 9 19
853 429.53 humidity 80.0 14400 > th dose dependent rect. 3 4
864 429.57 humidity 60.0 14400 > th dose independent rect. 20 6
873 429.59 humidity 70.0 270 > th dose independent rect. 21 10
889 429.67 wind 9.0 90 < th dose independent rect. 19 17
910 429.78 precipitation 0.1 14400 > th dose dependent rect. 13 1
911 429.78 humidity 80.0 14400 > th dose dependent rect. 22 3
914 429.79 precipitation 0.1 90 < th dose independent rect. 19 17
917 429.79 precipitation 0.1 90 < th dose dependent rect. 19 17
939 429.84 precipitation 0.1 14400 < th dose independent rect. 13 1
941 429.84 precipitation 0.1 14400 < th dose dependent rect. 13 1
951 429.88 radiation 40.0 90 < th dose independent rect. 12 7
969 429.97 radiation 30.0 270 < th dose independent rect. 21 10
970 429.98 wind 9.0 270 < th dose independent rect. 7 14
976 430.01 wind 7.0 1440 > th dose independent rect. 14 9
981 430.01 radiation 20.0 10 < th dose dependent rect. 7 11
982 430.02 temperature 10.0 270 > th dose independent rect. 21 10
983 430.02 temperature 30.0 270 < th dose independent rect. 21 10
984 430.02 humidity 50.0 270 > th dose independent rect. 21 10
989 430.02 temperature 10.0 270 > th dose independent rect. 7 14
991 430.05 humidity 70.0 90 > th dose independent rect. 23 10
999 430.09 humidity 50.0 14400 > th dose dependent rect. 22 3