Os07g0129300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PR1a protein.
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Os07g0129300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PR1a protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1304.63 | 1.7 | 4.4 | -3.03 | 1.42 | 6.67 | -2.68 | 10.2 | -0.656 | 6.38 | 0.9999 | 1444 | -- | -- |
| 1385.78 | 1.73 | 4.25 | -1.81 | 1.4 | 5.41 | -2.67 | -- | -0.409 | 6.52 | 1.16 | 1444 | -- | -- |
| 1322.43 | 1.69 | 4.4 | -3.08 | 1.41 | 6.7 | -- | 10.3 | -0.648 | 6.41 | 0.99 | 1444 | -- | -- |
| 1405.68 | 1.75 | 4.24 | -1.88 | 1.38 | 5.37 | -- | -- | -0.386 | 6.61 | 1.168 | 1445 | -- | -- |
| 1423.25 | 1.76 | 4.42 | -3.04 | -- | 6.67 | -- | 10.4 | -0.62 | -- | 0.84 | 1424 | -- | -- |
| 1772.73 | 1.97 | 4.41 | -2.86 | 1.29 | -- | -3.05 | -- | -1.09 | 6.15 | -- | -- | -- | -- |
| 1795.56 | 1.98 | 4.4 | -2.89 | 1.27 | -- | -- | -- | -1.08 | 6.27 | -- | -- | -- | -- |
| 1501.18 | 1.8 | 4.26 | -1.82 | -- | 5.25 | -- | -- | -0.358 | -- | 1.13 | 1428 | -- | -- |
| 1490.82 | 1.8 | 4.17 | -- | 1.35 | 5.95 | -- | -- | -0.12 | 6.83 | 1.13 | 1445 | -- | -- |
| 1879.78 | 2.03 | 4.42 | -2.86 | -- | -- | -- | -- | -1.05 | -- | -- | -- | -- | -- |
| 2015.94 | 2.1 | 4.33 | -- | 1.23 | -- | -- | -- | -0.757 | 6.4 | -- | -- | -- | -- |
| 1581.29 | 1.85 | 4.2 | -- | -- | 5.92 | -- | -- | -0.0999 | -- | 1.04 | 1425 | -- | -- |
| 2095.13 | 2.14 | 4.35 | -- | -- | -- | -- | -- | -0.734 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1296.83 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 6 | 1300.47 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 7 | 1301.21 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 10 | 1302.69 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 17 | 1304.82 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 17 |
| 22 | 1304.99 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 21 |
| 23 | 1304.99 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 21 |
| 27 | 1305.04 | radiation | 1 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 58 | 1305.36 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 76 | 1307.33 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 81 | 1308.62 | radiation | 1 | 1440 | < th | dose independent | sin | 1 | NA |
| 85 | 1309.93 | radiation | 1 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 100 | 1313.49 | radiation | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 102 | 1313.74 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 113 | 1313.90 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 160 | 1315.07 | radiation | 1 | 1440 | > th | dose independent | sin | 1 | NA |
| 177 | 1317.19 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 196 | 1321.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 15 |
| 197 | 1321.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 198 | 1322.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 19 |
| 201 | 1322.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 17 |
| 203 | 1322.31 | radiation | 1 | 1440 | < th | dose independent | sin | 12 | NA |
| 207 | 1322.48 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 212 | 1323.21 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 12 |
| 226 | 1324.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 248 | 1325.20 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 17 |
| 251 | 1325.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 21 |
| 253 | 1325.32 | radiation | 1 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 256 | 1325.43 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 21 |
| 284 | 1325.71 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 295 | 1325.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 299 | 1326.20 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 328 | 1329.60 | radiation | 1 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 350 | 1331.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 355 | 1332.64 | radiation | 1 | 1440 | > th | dose independent | sin | 12 | NA |
| 442 | 1349.39 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 444 | 1350.26 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 451 | 1354.56 | radiation | 1 | 1440 | < th | dose dependent | sin | 13 | NA |
| 465 | 1357.95 | temperature | 25 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 490 | 1363.04 | wind | 5 | 4320 | < th | dose independent | rect. | 19 | 11 |
| 501 | 1363.66 | wind | 3 | 4320 | > th | dose dependent | rect. | 21 | 8 |
| 504 | 1364.07 | wind | 5 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 510 | 1364.94 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 518 | 1366.30 | wind | 5 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 523 | 1367.10 | wind | 5 | 4320 | > th | dose independent | rect. | 19 | 11 |
| 546 | 1368.06 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 6 |
| 562 | 1368.63 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 568 | 1368.73 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 585 | 1369.46 | temperature | 25 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 593 | 1369.71 | temperature | 25 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 603 | 1370.26 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 9 |
| 605 | 1370.54 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 613 | 1371.10 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 622 | 1371.90 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 680 | 1374.43 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 14 |
| 742 | 1376.21 | temperature | 25 | 14400 | > th | dose dependent | sin | 21 | NA |
| 767 | 1377.14 | temperature | 25 | 14400 | > th | dose dependent | rect. | 24 | 16 |
| 841 | 1378.61 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 861 | 1378.83 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 7 |
| 881 | 1379.34 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 9 |
| 891 | 1379.57 | temperature | 25 | 14400 | > th | dose independent | rect. | 2 | 11 |
| 931 | 1380.30 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 952 | 1380.63 | wind | 9 | 43200 | > th | dose independent | rect. | 11 | 12 |
| 964 | 1380.73 | temperature | 30 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 972 | 1380.82 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 992 | 1381.17 | temperature | 30 | 14400 | < th | dose dependent | rect. | 12 | 3 |