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Os07g0129200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : PR1a protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.73 (0.0808) R2 : 0.361
β1 : 3.53 (0.306) R2dD : 0.215 R2D : 0.0101
β2 : 0.822 (0.202) R2dC : 0.0249 R2C : -0.015
β3 : -3.62 (0.298) R2dE : 0.238 R2E : 0.0385
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.57 (0.176) R2dN8 : 0.151 R2N8 : -0.0131
σ : 1.5
deviance : 1034.26
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C
peak time of C : 20.3
E
wheather : temperature
threshold : 17.43
memory length : 1424
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.2
open length of G : 0.533

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1021.03 1.5 6.69 4.32 0.841 -4 -0.88 3.58 1.63 20.6 16.49 1429 16.9 0.85
1032.37 1.5 6.73 3.57 0.855 -3.86 -1.08 -- 1.64 20.5 16.76 1424 17.2 0.516
1023.2 1.49 6.69 4.34 0.84 -4 -- 3.51 1.63 20.5 16.58 1428 16.9 0.917
1034.26 1.5 6.73 3.53 0.822 -3.62 -- -- 1.57 20.3 17.43 1424 17.2 0.533
1061.28 1.52 6.69 4.29 -- -3.93 -- 3.31 1.58 -- 16.92 1421 16.9 0.936
1369.14 1.73 6.89 2.47 0.93 -- -0.796 -- 0.991 19.7 -- -- -- --
1370.88 1.73 6.89 2.49 0.933 -- -- -- 0.99 19.6 -- -- -- --
1072.55 1.53 6.74 3.54 -- -3.77 -- -- 1.46 -- 17.06 1423 17.1 0.617
1343.95 1.71 6.81 -- 0.862 -2.48 -- -- 1.35 20.2 20.2 1443 17.6 0.483
1417.62 1.76 6.87 2.48 -- -- -- -- 0.976 -- -- -- -- --
1534.11 1.83 6.95 -- 0.914 -- -- -- 0.713 19.8 -- -- -- --
1372.31 1.73 6.87 -- -- -2.35 -- -- 1.02 -- 20.3 1404 17.4 0.45
1579.23 1.85 6.93 -- -- -- -- -- 0.702 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1028.97 temperature 15 1440 > th dose dependent rect. 17 1
3 1030.27 temperature 30 1440 < th dose dependent rect. 17 1
4 1031.34 wind 9 14400 < th dose independent rect. 18 3
6 1033.89 wind 9 43200 > th dose dependent rect. 18 12
9 1036.18 wind 9 14400 > th dose dependent rect. 18 3
12 1039.66 wind 9 14400 > th dose independent rect. 18 3
35 1045.83 wind 9 14400 > th dose dependent rect. 18 7
104 1053.28 wind 9 43200 > th dose independent rect. 18 12
158 1056.78 wind 9 14400 > th dose independent rect. 18 7
195 1058.70 temperature 15 1440 > th dose dependent sin 18 NA
198 1058.90 wind 9 14400 < th dose independent rect. 18 6
217 1059.33 temperature 15 720 > th dose dependent rect. 13 20
241 1060.33 wind 9 14400 < th dose independent rect. 18 10
300 1062.77 temperature 15 720 > th dose dependent rect. 15 18
324 1063.46 wind 9 14400 > th dose independent rect. 18 16
355 1064.38 wind 9 43200 < th dose independent rect. 18 13
388 1065.55 wind 9 14400 < th dose independent rect. 18 16
406 1066.03 temperature 30 1440 < th dose dependent sin 18 NA
458 1067.46 atmosphere 995 43200 < th dose dependent rect. 15 1
605 1071.48 atmosphere 995 43200 < th dose independent rect. 15 1
653 1072.55 atmosphere 995 43200 > th dose independent rect. 15 1
704 1073.55 wind 5 43200 < th dose independent rect. 14 18
717 1073.88 wind 5 43200 < th dose independent rect. 14 15
765 1074.84 wind 5 43200 > th dose independent rect. 14 18
803 1075.35 wind 5 43200 > th dose independent rect. 14 15
971 1078.07 wind 7 43200 > th dose dependent rect. 16 17