Os07g0128800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PR1a protein.
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Os07g0128800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PR1a protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 244.92 | 0.735 | 2.9 | 0.133 | 0.185 | 0.615 | 0.349 | 1.21 | 0.00334 | 8.33 | 77 | 692 | -- | -- |
| 246.35 | 0.731 | 2.91 | 0.0723 | 0.275 | 0.762 | -0.25 | -- | -0.0398 | 6.8 | 77 | 615 | -- | -- |
| 243.99 | 0.728 | 2.91 | 0.117 | 0.296 | 0.621 | -- | 0.964 | -0.0105 | 5.43 | 76.55 | 545 | -- | -- |
| 246.24 | 0.731 | 2.91 | 0.0629 | 0.302 | 0.658 | -- | -- | -0.0213 | 5.87 | 76 | 556 | -- | -- |
| 246.25 | 0.731 | 2.91 | 0.154 | -- | 0.423 | -- | 0.905 | -0.00368 | -- | 80 | 591 | -- | -- |
| 255.16 | 0.749 | 2.92 | 0.117 | 0.186 | -- | 0.524 | -- | -0.00284 | 18.5 | -- | -- | -- | -- |
| 255.63 | 0.749 | 2.92 | 0.108 | 0.196 | -- | -- | -- | -0.00223 | 19.7 | -- | -- | -- | -- |
| 248.24 | 0.734 | 2.92 | 0.0894 | -- | 0.445 | -- | -- | -0.0146 | -- | 79.74 | 634 | -- | -- |
| 246.33 | 0.731 | 2.91 | -- | 0.307 | 0.666 | -- | -- | -0.03 | 5.9 | 76 | 560 | -- | -- |
| 257.69 | 0.75 | 2.91 | 0.105 | -- | -- | -- | -- | -0.00512 | -- | -- | -- | -- | -- |
| 255.93 | 0.748 | 2.92 | -- | 0.195 | -- | -- | -- | -0.0142 | 19.7 | -- | -- | -- | -- |
| 248.23 | 0.734 | 2.92 | -- | -- | 0.48 | -- | -- | -0.019 | -- | 76 | 634 | -- | -- |
| 257.98 | 0.75 | 2.92 | -- | -- | -- | -- | -- | -0.0168 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 235.48 | humidity | 90 | 10 | < th | dose dependent | rect. | 2 | 2 |
| 2 | 235.64 | humidity | 90 | 10 | < th | dose independent | rect. | 2 | 2 |
| 4 | 235.91 | humidity | 80 | 90 | < th | dose dependent | rect. | 2 | 3 |
| 5 | 236.31 | humidity | 80 | 90 | < th | dose independent | rect. | 2 | 1 |
| 6 | 236.31 | humidity | 80 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 48 | 239.64 | wind | 5 | 10 | > th | dose independent | rect. | 20 | 1 |
| 52 | 239.82 | radiation | 1 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 73 | 240.74 | humidity | 80 | 270 | < th | dose independent | rect. | 24 | 4 |
| 79 | 241.02 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 19 | 1 |
| 80 | 241.03 | wind | 3 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 82 | 241.15 | wind | 7 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 89 | 241.49 | wind | 5 | 10 | > th | dose independent | rect. | 24 | 2 |
| 92 | 241.49 | wind | 9 | 270 | > th | dose independent | rect. | 19 | 3 |
| 95 | 241.49 | wind | 5 | 10 | > th | dose dependent | rect. | 24 | 2 |
| 99 | 241.50 | wind | 9 | 270 | > th | dose independent | rect. | 21 | 1 |
| 112 | 241.50 | wind | 9 | 270 | > th | dose dependent | rect. | 21 | 1 |
| 178 | 241.52 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 19 | 1 |
| 263 | 241.56 | wind | 9 | 30 | > th | dose independent | rect. | 1 | 10 |
| 267 | 241.56 | temperature | 30 | 270 | > th | dose dependent | rect. | 10 | 1 |
| 268 | 241.56 | wind | 9 | 30 | > th | dose dependent | rect. | 1 | 10 |
| 283 | 241.99 | temperature | 30 | 270 | > th | dose independent | rect. | 10 | 1 |
| 284 | 242.00 | temperature | 30 | 10 | < th | dose independent | rect. | 21 | 20 |
| 289 | 242.16 | radiation | 40 | 720 | > th | dose independent | rect. | 8 | 1 |
| 572 | 242.74 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 1 |
| 592 | 242.88 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 17 | 4 |
| 619 | 243.24 | wind | 7 | 90 | > th | dose independent | rect. | 18 | 1 |
| 622 | 243.25 | wind | 9 | 270 | > th | dose dependent | rect. | 15 | 4 |
| 669 | 243.59 | temperature | 20 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 670 | 243.59 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 4 |
| 677 | 243.66 | wind | 9 | 270 | > th | dose dependent | rect. | 12 | 7 |
| 680 | 243.67 | wind | 9 | 270 | > th | dose dependent | rect. | 15 | 2 |
| 686 | 243.69 | temperature | 30 | 270 | > th | dose dependent | sin | 8 | NA |
| 695 | 243.79 | wind | 9 | 270 | > th | dose independent | rect. | 15 | 2 |
| 706 | 243.88 | wind | 9 | 270 | > th | dose dependent | sin | 14 | NA |
| 709 | 243.89 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 11 |
| 740 | 244.09 | humidity | 90 | 30 | < th | dose independent | rect. | 1 | 20 |
| 741 | 244.10 | wind | 9 | 270 | > th | dose independent | rect. | 15 | 6 |
| 754 | 244.16 | humidity | 90 | 270 | < th | dose independent | rect. | 24 | 20 |
| 759 | 244.26 | temperature | 30 | 30 | < th | dose independent | rect. | 21 | 22 |
| 814 | 244.42 | wind | 9 | 270 | > th | dose independent | rect. | 12 | 7 |
| 825 | 244.43 | radiation | 1 | 90 | > th | dose independent | rect. | 18 | 1 |
| 892 | 244.67 | humidity | 80 | 720 | < th | dose independent | rect. | 8 | 20 |
| 893 | 244.68 | humidity | 80 | 720 | > th | dose independent | rect. | 21 | 21 |
| 946 | 244.78 | humidity | 80 | 720 | < th | dose independent | rect. | 15 | 21 |
| 947 | 244.79 | temperature | 30 | 10 | < th | dose independent | rect. | 6 | 11 |
| 950 | 244.82 | humidity | 80 | 270 | < th | dose independent | rect. | 22 | 21 |
| 953 | 244.83 | wind | 9 | 270 | > th | dose independent | sin | 14 | NA |
| 976 | 244.94 | temperature | 30 | 10 | < th | dose independent | rect. | 8 | 9 |
| 987 | 245.02 | wind | 5 | 90 | > th | dose independent | rect. | 17 | 3 |
| 990 | 245.03 | wind | 5 | 720 | > th | dose dependent | rect. | 17 | 3 |