FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0127700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to PR1a protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.41 (0.05) R2 : 0.164
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.693 (0.129) R2dC : 0.055 R2C : 0.0278
β3 : 3.15 (0.401) R2dE : 0.113 R2E : 0.0718
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.394 (0.105) R2dN8 : 0.0327 R2N8 : 0.0165
σ : 0.936
deviance : 403.89
__
_____
C
peak time of C : 7.63
E
wheather : temperature
threshold : 24.92
memory length : 113
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12.9
open length of G : 3.73

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
395.71 0.935 3.39 0.464 0.705 2.98 0.4 -1.95 0.447 7.76 24.98 108 13 3.86
398.14 0.929 3.4 0.408 0.695 3.11 0.621 -- 0.435 7.76 24.97 108 13 3.75
395.92 0.927 3.4 0.482 0.708 3.06 -- -2.04 0.444 7.63 24.9 111 13 3.78
399.19 0.931 3.4 0.423 0.697 3.15 -- -- 0.434 7.66 24.99 111 12.9 3.75
421.64 0.956 3.41 0.467 -- 2.8 -- -2.03 0.445 -- 25 109 12.9 3.71
450.31 0.995 3.42 0.323 0.584 -- 0.746 -- 0.36 8.75 -- -- -- --
452.16 0.996 3.42 0.348 0.581 -- -- -- 0.36 8.78 -- -- -- --
424.62 0.96 3.42 0.44 -- 2.91 -- -- 0.438 -- 24.81 107 12.9 3.68
403.89 0.936 3.41 -- 0.693 3.15 -- -- 0.394 7.63 24.92 113 12.9 3.73
471.33 1.01 3.43 0.349 -- -- -- -- 0.365 -- -- -- -- --
455.35 0.998 3.43 -- 0.582 -- -- -- 0.321 8.73 -- -- -- --
429.18 0.965 3.43 -- -- 2.91 -- -- 0.386 -- 24.63 104 13 3.55
474.54 1.02 3.44 -- -- -- -- -- 0.326 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 397.18 temperature 25 90 < th dose independent rect. 13 4
4 399.55 temperature 30 270 < th dose dependent rect. 12 4
5 400.11 temperature 30 270 < th dose dependent rect. 13 2
6 400.22 temperature 25 270 < th dose independent rect. 13 1
12 402.17 temperature 25 10 < th dose independent rect. 13 5
42 408.58 radiation 20 270 < th dose independent rect. 13 3
47 409.01 radiation 40 270 < th dose dependent rect. 13 2
48 409.06 temperature 25 10 < th dose dependent rect. 14 2
51 409.24 wind 5 720 > th dose dependent rect. 20 14
55 409.46 wind 5 720 < th dose independent rect. 24 9
57 409.73 humidity 70 270 > th dose independent rect. 13 2
58 409.79 wind 7 10 < th dose independent rect. 7 23
62 410.05 wind 5 720 < th dose independent rect. 21 15
63 410.21 wind 5 720 > th dose independent rect. 23 11
68 410.46 wind 5 720 > th dose independent rect. 20 15
70 410.57 wind 5 720 < th dose independent rect. 23 12
73 410.67 radiation 20 10 < th dose dependent rect. 6 10
75 410.72 temperature 25 10 < th dose dependent rect. 16 1
87 411.33 wind 5 720 > th dose independent sin 8 NA
100 411.84 wind 5 720 > th dose independent rect. 24 9
121 412.36 wind 5 720 < th dose independent sin 8 NA
126 412.53 radiation 20 30 < th dose dependent rect. 6 12
131 412.82 wind 5 720 > th dose dependent rect. 24 9
151 413.49 wind 5 720 > th dose dependent sin 9 NA
168 414.04 radiation 1 10 < th dose independent rect. 6 12
178 414.37 radiation 1 10 < th dose independent rect. 11 7
184 414.41 radiation 1 10 < th dose dependent rect. 6 10
199 414.81 radiation 1 10 < th dose independent rect. 11 5
237 415.34 radiation 1 270 < th dose independent rect. 11 4
238 415.34 radiation 1 270 < th dose dependent rect. 11 4
240 415.42 radiation 1 90 < th dose dependent rect. 11 6
241 415.43 radiation 1 10 < th dose dependent rect. 11 5
260 415.77 humidity 70 30 > th dose independent rect. 13 18
262 415.79 wind 5 720 < th dose independent rect. 18 18
282 416.10 radiation 1 10 < th dose independent rect. 13 5
338 417.19 temperature 10 30 > th dose dependent rect. 7 23
348 417.34 humidity 70 720 > th dose independent rect. 19 21
358 417.50 humidity 70 10 > th dose dependent rect. 13 5
373 417.74 humidity 60 270 > th dose dependent rect. 12 4
374 417.74 wind 5 720 > th dose dependent rect. 1 7
377 417.79 humidity 60 270 > th dose dependent rect. 13 2
392 418.04 wind 3 720 > th dose independent rect. 2 1
404 418.20 humidity 70 720 > th dose independent rect. 4 20
419 418.58 radiation 10 1440 < th dose dependent rect. 13 3
422 418.66 radiation 20 10 < th dose independent rect. 6 10
437 418.82 humidity 80 1440 > th dose dependent rect. 15 1
451 419.03 temperature 30 1440 < th dose dependent rect. 15 1
460 419.11 humidity 80 1440 < th dose independent rect. 24 14
461 419.13 humidity 80 1440 < th dose independent rect. 7 7
481 419.38 humidity 70 270 > th dose independent rect. 11 20
488 419.43 temperature 30 1440 < th dose dependent rect. 13 3
490 419.44 wind 3 720 > th dose dependent rect. 1 4
498 419.53 humidity 80 1440 < th dose independent rect. 13 1
505 419.62 temperature 10 1440 > th dose dependent rect. 15 1
518 419.71 temperature 25 4320 > th dose dependent rect. 4 2
522 419.81 wind 1 90 > th dose independent rect. 19 20
523 419.81 wind 9 30 < th dose dependent rect. 7 23
528 419.86 radiation 10 1440 < th dose dependent rect. 9 7
533 419.91 humidity 80 1440 < th dose independent rect. 12 3
545 420.01 radiation 1 1440 > th dose independent rect. 15 1
547 420.02 temperature 25 4320 > th dose independent rect. 4 2
553 420.05 humidity 80 1440 > th dose independent rect. 12 4
574 420.27 humidity 80 1440 > th dose independent rect. 13 1
575 420.27 radiation 1 1440 < th dose independent rect. 15 1
577 420.27 humidity 50 1440 > th dose dependent rect. 15 1
578 420.27 temperature 20 90 > th dose dependent rect. 3 4
579 420.28 temperature 25 720 > th dose independent rect. 7 12
596 420.40 temperature 25 1440 < th dose independent rect. 13 1
597 420.40 humidity 50 1440 > th dose dependent rect. 13 3
607 420.53 humidity 90 1440 < th dose dependent rect. 15 1
614 420.58 humidity 80 1440 > th dose independent rect. 6 8
615 420.59 temperature 25 1440 < th dose independent rect. 11 3
617 420.59 humidity 80 1440 > th dose independent rect. 3 11
618 420.61 radiation 1 1440 > th dose independent rect. 11 5
619 420.61 humidity 80 1440 > th dose independent rect. 24 14
628 420.65 radiation 1 1440 < th dose independent rect. 13 3
629 420.65 temperature 25 1440 < th dose independent rect. 11 7
643 420.71 radiation 1 1440 < th dose independent rect. 10 6
649 420.74 humidity 60 10 > th dose dependent rect. 15 3
656 420.79 humidity 50 1440 > th dose dependent rect. 13 1
673 420.87 humidity 90 1440 < th dose independent rect. 15 1
683 420.93 wind 7 30 > th dose dependent rect. 15 4
700 421.02 humidity 90 1440 < th dose dependent rect. 13 3
715 421.10 temperature 25 4320 < th dose independent rect. 4 2
724 421.16 temperature 25 1440 > th dose independent rect. 11 7
725 421.16 humidity 90 1440 < th dose dependent rect. 13 1
747 421.28 temperature 25 1440 < th dose independent rect. 7 10
758 421.33 humidity 80 10 > th dose independent rect. 6 12
784 421.47 radiation 10 1440 > th dose independent rect. 11 1
785 421.47 temperature 25 1440 > th dose independent rect. 8 9
797 421.52 humidity 80 1440 < th dose independent sin 5 NA
807 421.55 humidity 80 1440 > th dose independent rect. 15 1
818 421.61 temperature 25 1440 > th dose independent rect. 13 1
820 421.61 wind 1 720 > th dose dependent rect. 23 7
827 421.68 temperature 25 1440 > th dose independent rect. 11 3
877 421.92 humidity 80 1440 > th dose dependent rect. 12 4
948 422.25 wind 3 720 > th dose dependent rect. 2 1
986 422.40 humidity 60 10 > th dose dependent rect. 6 12
987 422.41 radiation 1 10 > th dose independent rect. 7 23