Os07g0127600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Allergen V5/Tpx-1 related family protein.
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Os07g0127600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Allergen V5/Tpx-1 related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.52 | 0.383 | 3.25 | 0.199 | 0.228 | 0.309 | -0.0476 | 1.17 | -0.00797 | 7.47 | 91 | 5857 | -- | -- |
| 68.5 | 0.385 | 3.24 | 0.122 | 0.225 | 0.332 | -0.0385 | -- | -0.036 | 7.52 | 100.1 | 5741 | -- | -- |
| 66.53 | 0.38 | 3.25 | 0.199 | 0.227 | 0.307 | -- | 1.17 | -0.00749 | 7.52 | 91 | 5857 | -- | -- |
| 68.48 | 0.385 | 3.24 | 0.122 | 0.223 | 0.332 | -- | -- | -0.0357 | 7.55 | 92 | 5739 | -- | -- |
| 69.27 | 0.388 | 3.25 | 0.2 | -- | 0.315 | -- | 1.14 | -0.0091 | -- | 91 | 5796 | -- | -- |
| 70.01 | 0.392 | 3.23 | 0.0966 | 0.228 | -- | -0.0633 | -- | 0.0369 | 7.39 | -- | -- | -- | -- |
| 70.02 | 0.392 | 3.23 | 0.0954 | 0.227 | -- | -- | -- | 0.0371 | 7.46 | -- | -- | -- | -- |
| 71.16 | 0.393 | 3.25 | 0.124 | -- | 0.345 | -- | -- | -0.0326 | -- | 91.7 | 5742 | -- | -- |
| 68.85 | 0.386 | 3.24 | -- | 0.23 | 0.329 | -- | -- | -0.0392 | 7.49 | 91 | 5737 | -- | -- |
| 72.78 | 0.399 | 3.23 | 0.0989 | -- | -- | -- | -- | 0.0407 | -- | -- | -- | -- | -- |
| 70.26 | 0.392 | 3.23 | -- | 0.228 | -- | -- | -- | 0.0265 | 7.44 | -- | -- | -- | -- |
| 71.55 | 0.394 | 3.25 | -- | -- | 0.332 | -- | -- | -0.0393 | -- | 89 | 5739 | -- | -- |
| 73.04 | 0.399 | 3.23 | -- | -- | -- | -- | -- | 0.0298 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.40 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 2 | 62.40 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 3 | 62.41 | radiation | 10.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 5 | 62.46 | wind | 1.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 6 | 62.48 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 8 | 62.83 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 9 | 62.84 | temperature | 25.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 10 | 62.84 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 12 | 62.89 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 17 | 63.09 | humidity | 90.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 19 | 63.15 | wind | 1.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 20 | 63.16 | wind | 9.0 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 21 | 63.16 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 25 | 63.16 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 29 | 63.16 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 34 | 63.16 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 35 | 63.16 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 36 | 63.16 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 39 | 63.20 | wind | 5.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 42 | 63.20 | temperature | 10.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 44 | 63.20 | temperature | 30.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 45 | 63.20 | humidity | 50.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 48 | 63.20 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 54 | 63.20 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 6 | 1 |
| 55 | 63.20 | temperature | 10.0 | 30 | > th | dose independent | rect. | 7 | 23 |
| 56 | 63.20 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 58 | 63.22 | radiation | 1.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 65 | 63.39 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 66 | 63.40 | wind | 9.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 72 | 63.48 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 75 | 63.64 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 4 | 3 |
| 78 | 63.67 | wind | 9.0 | 30 | < th | dose independent | rect. | 7 | 23 |
| 107 | 64.04 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 124 | 64.75 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 7 | 23 |
| 132 | 65.58 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 138 | 65.74 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 3 | 6 |
| 144 | 65.84 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 2 | 5 |
| 149 | 65.93 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 164 | 66.13 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 168 | 66.24 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 6 |
| 182 | 66.29 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 195 | 66.32 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 10 | 6 |
| 200 | 66.34 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 10 | 6 |
| 203 | 66.35 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 20 | 13 |
| 207 | 66.37 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 215 | 66.38 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 21 | 13 |
| 233 | 66.40 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 234 | 66.40 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 240 | 66.40 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 248 | 66.41 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 4 | 5 |
| 280 | 66.42 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 288 | 66.42 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 10 | 19 |
| 296 | 66.43 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 8 |
| 322 | 66.44 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 329 | 66.45 | temperature | 30.0 | 14400 | < th | dose independent | sin | 20 | NA |
| 397 | 66.46 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 22 |
| 403 | 66.47 | temperature | 30.0 | 14400 | > th | dose independent | sin | 22 | NA |
| 424 | 66.47 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 15 |
| 451 | 66.47 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 7 | 5 |
| 453 | 66.48 | temperature | 30.0 | 14400 | > th | dose independent | sin | 19 | NA |
| 461 | 66.48 | temperature | 30.0 | 14400 | < th | dose independent | no | NA | NA |
| 593 | 66.48 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 600 | 66.49 | humidity | 90.0 | 90 | < th | dose independent | rect. | 2 | 5 |
| 632 | 66.49 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 22 |
| 643 | 66.50 | temperature | 30.0 | 14400 | > th | dose independent | no | NA | NA |
| 644 | 66.50 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 836 | 66.53 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 837 | 66.53 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 840 | 66.53 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 20 | 14 |
| 843 | 66.53 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 10 | 20 |
| 857 | 66.54 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 861 | 66.54 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 5 | NA |
| 863 | 66.54 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 868 | 66.54 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 24 | 9 |
| 906 | 66.57 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 911 | 66.57 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 24 | 9 |
| 937 | 66.59 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 6 | 3 |