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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0127500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to PR-1a pathogenesis related protein (Hv-1a) precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.35 (0.0243) R2 : 0.000228
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0165 (0.0511) R2dN8 : 0.000295 R2N8 : 0.000228
σ : 0.457
deviance : 95.78
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
87.78 0.44 3.32 0.0247 0.302 -0.0274 -0.329 1.13 0.0137 6.3 57.45 4322 -- --
87.97 0.437 3.34 -0.0556 0.304 0.358 -0.301 -- 0.0301 6.25 39 7918 -- --
88.04 0.437 3.32 0.0188 0.3 -0.0175 -- 1.1 0.0151 6.45 57.7 4328 -- --
88.21 0.437 3.34 -0.0612 0.303 0.361 -- -- 0.0314 6.4 38.97 6915 -- --
92.72 0.448 3.33 0.0239 -- 0.0089 -- 1.04 0.0257 -- 58.22 4334 -- --
90.67 0.446 3.34 0.0838 0.301 -- -0.326 -- 0.0186 6.22 -- -- -- --
90.92 0.447 3.34 0.0805 0.299 -- -- -- 0.0199 6.34 -- -- -- --
92.98 0.449 3.34 -0.0499 -- 0.352 -- -- 0.0376 -- 37.06 8371 -- --
88.29 0.438 3.34 -- 0.302 0.336 -- -- 0.0364 6.4 39 7354 -- --
95.57 0.457 3.34 0.0884 -- -- -- -- 0.0263 -- -- -- -- --
91.09 0.446 3.34 -- 0.3 -- -- -- 0.0109 6.33 -- -- -- --
93.04 0.449 3.34 -- -- 0.331 -- -- 0.0415 -- 37.69 8023 -- --
95.78 0.457 3.35 -- -- -- -- -- 0.0165 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.95 humidity 80.0 10 < th dose independent rect. 6 2
3 80.97 radiation 10.0 30 > th dose independent rect. 7 1
10 81.81 humidity 80.0 10 < th dose independent rect. 2 6
13 81.81 humidity 80.0 10 < th dose independent rect. 24 8
40 82.60 atmosphere 1005.0 10 > th dose dependent rect. 2 3
43 82.69 temperature 25.0 90 > th dose dependent rect. 1 4
47 82.85 temperature 25.0 270 > th dose dependent rect. 1 1
49 82.87 temperature 25.0 270 > th dose independent rect. 1 1
51 82.90 temperature 25.0 90 > th dose independent rect. 1 3
64 83.52 temperature 25.0 10 > th dose independent rect. 7 1
70 83.85 atmosphere 1005.0 270 > th dose dependent rect. 2 1
76 84.34 temperature 25.0 10 > th dose independent rect. 4 4
77 84.37 temperature 20.0 30 > th dose dependent rect. 2 6
80 84.42 atmosphere 1000.0 30 > th dose dependent rect. 2 6
90 84.63 atmosphere 1005.0 30 > th dose independent rect. 2 6
95 84.69 atmosphere 995.0 30 > th dose independent rect. 3 23
114 85.05 atmosphere 1010.0 30 < th dose dependent rect. 2 1
121 85.16 temperature 15.0 30 > th dose independent rect. 3 23
126 85.20 wind 1.0 30 < th dose dependent rect. 2 1
127 85.21 wind 1.0 30 < th dose independent rect. 2 1
134 85.25 humidity 90.0 10 < th dose dependent rect. 7 1
142 85.27 temperature 10.0 30 > th dose independent rect. 2 1
144 85.27 temperature 25.0 30 < th dose independent rect. 2 1
146 85.27 humidity 50.0 30 > th dose independent rect. 2 1
149 85.27 atmosphere 995.0 30 > th dose independent rect. 2 1
150 85.27 atmosphere 1010.0 30 < th dose independent rect. 2 1
152 85.27 radiation 1.0 30 < th dose independent rect. 2 1
157 85.27 precipitation 0.1 30 < th dose independent rect. 2 1
159 85.27 temperature 10.0 30 > th dose dependent rect. 2 1
161 85.27 radiation 1.0 30 < th dose dependent rect. 2 1
166 85.27 precipitation 0.1 30 < th dose dependent rect. 2 1
167 85.28 humidity 90.0 30 > th dose independent rect. 2 1
170 85.28 humidity 50.0 30 > th dose dependent rect. 2 1
174 85.29 atmosphere 1000.0 30 > th dose independent rect. 8 18
177 85.29 temperature 30.0 30 < th dose dependent rect. 2 1
183 85.33 atmosphere 995.0 30 > th dose dependent rect. 2 1
189 85.34 wind 5.0 30 < th dose dependent rect. 2 6
195 85.37 atmosphere 1005.0 30 > th dose independent rect. 2 1
202 85.39 wind 9.0 30 < th dose independent rect. 3 23
228 85.41 wind 1.0 30 > th dose independent rect. 2 1
235 85.45 wind 3.0 30 < th dose independent rect. 2 6
239 85.48 radiation 1.0 43200 < th dose dependent rect. 3 1
260 85.68 temperature 25.0 90 < th dose independent rect. 6 1
276 85.83 humidity 90.0 30 < th dose dependent rect. 3 5
291 85.91 atmosphere 1005.0 10 > th dose independent rect. 7 1
295 85.93 precipitation 0.1 30 < th dose independent rect. 3 23
296 85.93 precipitation 0.1 30 < th dose dependent rect. 3 23
301 85.98 humidity 90.0 10 < th dose independent rect. 3 2
304 86.00 humidity 70.0 14400 > th dose independent rect. 8 1
315 86.06 radiation 1.0 30 > th dose independent rect. 8 22
322 86.12 humidity 70.0 14400 < th dose independent rect. 8 1
325 86.12 wind 1.0 90 > th dose independent rect. 1 7
327 86.13 humidity 90.0 90 < th dose independent rect. 2 3
329 86.13 humidity 80.0 14400 < th dose dependent rect. 7 2
331 86.13 humidity 80.0 14400 < th dose dependent rect. 5 4
333 86.15 atmosphere 1005.0 30 > th dose independent rect. 2 3
341 86.18 humidity 70.0 14400 > th dose independent rect. 4 5
342 86.18 humidity 70.0 14400 > th dose independent rect. 24 9
345 86.18 wind 9.0 30 < th dose independent rect. 8 18
348 86.19 humidity 70.0 14400 > th dose independent rect. 6 3
360 86.21 wind 9.0 1440 < th dose independent rect. 3 6
361 86.21 temperature 10.0 1440 > th dose independent rect. 3 6
364 86.21 humidity 50.0 1440 > th dose independent rect. 3 6
366 86.21 atmosphere 995.0 1440 > th dose independent rect. 3 6
368 86.21 temperature 10.0 1440 > th dose independent rect. 9 18
371 86.22 atmosphere 995.0 10 > th dose independent rect. 8 23
374 86.23 humidity 50.0 30 > th dose independent rect. 8 18
376 86.23 radiation 1.0 10 > th dose dependent rect. 7 1
378 86.23 radiation 1.0 4320 < th dose dependent rect. 3 1
380 86.24 precipitation 0.1 30 < th dose independent rect. 2 6
381 86.24 atmosphere 995.0 720 > th dose independent rect. 23 16
386 86.24 precipitation 0.1 30 < th dose dependent rect. 2 6
393 86.27 wind 9.0 1440 < th dose independent rect. 3 1
394 86.27 temperature 10.0 1440 > th dose independent rect. 3 1
397 86.27 temperature 30.0 1440 < th dose independent rect. 3 1
401 86.27 humidity 50.0 1440 > th dose independent rect. 3 1
410 86.27 atmosphere 995.0 1440 > th dose independent rect. 3 1
411 86.27 radiation 1.0 1440 < th dose independent rect. 3 1
431 86.27 temperature 10.0 1440 > th dose independent rect. 4 23
453 86.29 temperature 10.0 30 > th dose independent rect. 2 6
455 86.29 temperature 30.0 30 < th dose independent rect. 2 6
456 86.29 humidity 50.0 30 > th dose independent rect. 2 6
458 86.29 atmosphere 995.0 30 > th dose independent rect. 2 6
459 86.29 atmosphere 1015.0 30 < th dose independent rect. 2 6
460 86.29 temperature 10.0 30 > th dose independent rect. 8 18
469 86.33 precipitation 0.1 30 < th dose independent rect. 8 18
470 86.33 precipitation 0.1 30 < th dose dependent rect. 8 18
478 86.36 atmosphere 1005.0 10 > th dose dependent rect. 4 1
483 86.39 humidity 70.0 14400 < th dose independent rect. 6 3
503 86.44 wind 5.0 10 < th dose dependent rect. 7 1
522 86.48 humidity 50.0 30 > th dose independent rect. 3 23
529 86.50 atmosphere 995.0 30 > th dose dependent rect. 8 18
531 86.51 radiation 40.0 30 < th dose independent rect. 2 6
538 86.53 wind 5.0 10 < th dose independent rect. 7 1
542 86.53 humidity 90.0 10 < th dose dependent rect. 4 1
544 86.54 wind 1.0 30 > th dose independent rect. 7 1
545 86.54 wind 1.0 14400 < th dose dependent rect. 6 1
548 86.55 temperature 20.0 90 > th dose dependent rect. 4 1
573 86.66 wind 1.0 30 > th dose independent rect. 4 1
576 86.67 wind 9.0 10 < th dose independent rect. 8 23
585 86.70 wind 1.0 30 > th dose independent rect. 8 18
595 86.73 temperature 10.0 30 > th dose dependent rect. 8 18
596 86.74 temperature 25.0 1440 < th dose independent rect. 1 1
599 86.74 wind 5.0 30 < th dose dependent rect. 2 3
607 86.77 precipitation 0.1 720 < th dose independent rect. 15 8
610 86.77 precipitation 0.1 720 < th dose dependent rect. 15 8
612 86.79 temperature 15.0 10 > th dose dependent rect. 7 1
615 86.80 temperature 30.0 30 < th dose independent rect. 8 18
617 86.81 temperature 20.0 270 > th dose independent rect. 4 1
618 86.81 humidity 80.0 4320 > th dose independent rect. 7 6
623 86.83 wind 1.0 14400 < th dose independent rect. 6 1
626 86.83 temperature 20.0 10 > th dose dependent rect. 4 4
630 86.85 humidity 90.0 90 < th dose independent rect. 2 1
631 86.85 humidity 80.0 4320 < th dose independent rect. 7 6
639 86.87 temperature 30.0 30 < th dose dependent rect. 4 1
646 86.89 precipitation 0.1 10 < th dose independent rect. 7 1
651 86.89 atmosphere 995.0 10 > th dose dependent rect. 7 1
652 86.89 precipitation 0.1 10 < th dose dependent rect. 7 1
653 86.90 wind 7.0 1440 < th dose independent rect. 5 1
656 86.90 temperature 10.0 1440 > th dose independent rect. 5 1
659 86.90 temperature 30.0 1440 < th dose independent rect. 5 1
663 86.90 humidity 50.0 1440 > th dose independent rect. 5 1
672 86.90 atmosphere 995.0 1440 > th dose independent rect. 5 1
673 86.90 atmosphere 1015.0 1440 < th dose independent rect. 5 1
674 86.90 radiation 20.0 1440 < th dose independent rect. 5 1
686 86.90 temperature 10.0 1440 > th dose independent rect. 6 23
700 86.93 temperature 10.0 10 > th dose independent rect. 7 1
702 86.93 temperature 30.0 10 < th dose independent rect. 7 1
703 86.93 humidity 50.0 10 > th dose independent rect. 7 1
705 86.93 atmosphere 995.0 10 > th dose independent rect. 7 1
706 86.93 atmosphere 1015.0 10 < th dose independent rect. 7 1
710 86.93 temperature 10.0 10 > th dose independent rect. 8 23
717 86.95 temperature 20.0 270 < th dose independent rect. 4 3
719 86.95 temperature 10.0 720 > th dose independent rect. 15 8
721 86.95 temperature 10.0 720 > th dose independent rect. 23 16
723 86.96 wind 5.0 30 < th dose independent rect. 4 1
726 86.96 wind 1.0 14400 > th dose independent rect. 1 2
728 86.96 humidity 50.0 4320 > th dose dependent rect. 11 1
729 86.96 humidity 90.0 4320 < th dose dependent rect. 11 1
732 86.97 atmosphere 1005.0 30 > th dose independent rect. 4 1
740 86.98 humidity 70.0 4320 > th dose independent rect. 10 1
745 86.99 wind 3.0 4320 > th dose independent rect. 6 1
748 86.99 wind 7.0 14400 < th dose independent rect. 9 1
749 86.99 wind 5.0 14400 < th dose independent rect. 11 1
750 86.99 temperature 10.0 30 > th dose independent rect. 4 1
754 86.99 temperature 30.0 30 < th dose independent rect. 4 1
756 86.99 humidity 50.0 30 > th dose independent rect. 4 1
762 86.99 atmosphere 995.0 30 > th dose independent rect. 4 1
765 86.99 atmosphere 1010.0 30 < th dose independent rect. 4 1
768 86.99 radiation 1.0 30 < th dose independent rect. 4 1
777 86.99 temperature 10.0 30 > th dose independent rect. 5 23
779 86.99 radiation 10.0 30 < th dose dependent rect. 4 1
787 87.00 precipitation 0.1 30 < th dose independent rect. 4 1
790 87.00 wind 9.0 10 < th dose independent rect. 5 23
793 87.00 precipitation 0.1 30 < th dose dependent rect. 4 1
799 87.01 wind 9.0 4320 < th dose dependent rect. 6 1
800 87.01 humidity 70.0 4320 < th dose dependent rect. 11 2
806 87.03 wind 9.0 1440 < th dose independent rect. 8 1
809 87.03 temperature 10.0 1440 > th dose independent rect. 8 1
814 87.03 humidity 50.0 1440 > th dose independent rect. 8 1
816 87.03 atmosphere 995.0 1440 > th dose independent rect. 8 1
819 87.03 atmosphere 1015.0 1440 < th dose independent rect. 8 1
820 87.03 humidity 90.0 720 < th dose independent rect. 24 5
823 87.03 temperature 10.0 1440 > th dose independent rect. 9 23
830 87.04 atmosphere 1000.0 10 > th dose independent rect. 5 21
832 87.04 temperature 10.0 30 > th dose dependent rect. 4 1
839 87.04 humidity 90.0 4320 < th dose dependent rect. 5 8
841 87.04 humidity 50.0 4320 > th dose dependent rect. 3 10
847 87.05 wind 1.0 14400 < th dose dependent rect. 4 4
853 87.06 atmosphere 1005.0 270 > th dose independent rect. 1 4
856 87.06 wind 9.0 30 < th dose dependent rect. 4 1
857 87.06 humidity 50.0 30 > th dose dependent rect. 4 1
870 87.07 wind 1.0 4320 > th dose dependent rect. 6 1
875 87.07 radiation 1.0 30 > th dose dependent rect. 17 15
879 87.08 wind 1.0 14400 < th dose independent rect. 4 4
881 87.08 radiation 20.0 30 < th dose independent rect. 2 6
917 87.11 wind 1.0 14400 < th dose independent rect. 4 7
923 87.11 temperature 25.0 270 < th dose dependent rect. 4 3
928 87.12 humidity 60.0 4320 < th dose independent rect. 11 1
929 87.12 radiation 40.0 30 < th dose independent rect. 7 1
937 87.12 humidity 90.0 90 < th dose independent rect. 1 20
958 87.13 wind 1.0 14400 > th dose independent rect. 4 4
976 87.13 wind 1.0 14400 < th dose dependent rect. 4 7
1000 87.14 atmosphere 1015.0 30 < th dose dependent rect. 4 1