Os07g0125000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pathogenesis-related protein PR-1 precursor.
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Os07g0125000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pathogenesis-related protein PR-1 precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.36 | 0.337 | 10.7 | 0.517 | 1.15 | 1.21 | -0.709 | -0.28 | -0.375 | 12.3 | 26.6 | 312 | -- | -- |
| 51.46 | 0.334 | 10.7 | 0.484 | 1.16 | 1.23 | -0.669 | -- | -0.387 | 12.2 | 26.43 | 300 | -- | -- |
| 53.45 | 0.341 | 10.7 | 0.471 | 1.15 | 1.25 | -- | -0.0714 | -0.374 | 12.2 | 26.28 | 317 | -- | -- |
| 53.42 | 0.34 | 10.7 | 0.439 | 1.15 | 1.22 | -- | -- | -0.392 | 12.2 | 26.35 | 305 | -- | -- |
| 99.64 | 0.465 | 10.6 | 0.849 | -- | 1.74 | -- | -1.38 | -0.264 | -- | 29.93 | 870 | -- | -- |
| 73.21 | 0.401 | 10.7 | 0.147 | 1.09 | -- | -0.635 | -- | -0.659 | 11.4 | -- | -- | -- | -- |
| 74.93 | 0.405 | 10.7 | 0.12 | 1.09 | -- | -- | -- | -0.662 | 11.3 | -- | -- | -- | -- |
| 100.68 | 0.467 | 10.7 | 0.588 | -- | 1.73 | -- | -- | -0.307 | -- | 28.62 | 847 | -- | -- |
| 58.11 | 0.355 | 10.7 | -- | 1.18 | 1.08 | -- | -- | -0.455 | 12 | 26.01 | 299 | -- | -- |
| 149.73 | 0.572 | 10.7 | 0.0922 | -- | -- | -- | -- | -0.673 | -- | -- | -- | -- | -- |
| 75.31 | 0.406 | 10.7 | -- | 1.09 | -- | -- | -- | -0.676 | 11.3 | -- | -- | -- | -- |
| 108.72 | 0.486 | 10.7 | -- | -- | 1.49 | -- | -- | -0.42 | -- | 28.96 | 835 | -- | -- |
| 149.95 | 0.572 | 10.7 | -- | -- | -- | -- | -- | -0.683 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.44 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 16 |
| 3 | 50.93 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 18 |
| 4 | 50.97 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 20 |
| 5 | 50.97 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 54 | 51.51 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 69 | 51.70 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 88 | 51.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 94 | 52.01 | temperature | 15 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 111 | 52.13 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 126 | 52.37 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 129 | 52.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 20 |
| 132 | 52.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 164 | 52.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 170 | 52.59 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 13 |
| 179 | 52.62 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 13 |
| 183 | 52.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 17 |
| 365 | 53.01 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 367 | 53.01 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 378 | 53.02 | temperature | 10 | 1440 | > th | dose dependent | sin | 9 | NA |
| 450 | 53.15 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 455 | 53.17 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 493 | 53.23 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 625 | 53.39 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 659 | 53.42 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 716 | 53.48 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 815 | 53.62 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 18 |
| 819 | 53.63 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 862 | 53.68 | temperature | 20 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 866 | 53.68 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 910 | 53.73 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 19 |
| 948 | 53.77 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 954 | 53.77 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 17 |
| 968 | 53.78 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 19 |