Os07g0124400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os07g0124400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 201.55 | 0.667 | 7.9 | 2.51 | 0.325 | 1.5 | -1.64 | -2.26 | 0.0647 | 7.1 | 25.45 | 121 | -- | -- |
| 202.83 | 0.663 | 7.86 | 2.76 | 0.356 | 1.3 | -1.36 | -- | 0.138 | 7.75 | 25.54 | 155 | -- | -- |
| 207.35 | 0.671 | 7.87 | 2.64 | 0.377 | 1.42 | -- | -0.999 | 0.124 | 8.25 | 25.7 | 174 | -- | -- |
| 207.67 | 0.671 | 7.86 | 2.73 | 0.371 | 1.3 | -- | -- | 0.156 | 8.7 | 25.8 | 182 | -- | -- |
| 213.08 | 0.684 | 7.89 | 2.63 | -- | 1.38 | -- | -1.35 | 0.126 | -- | 26.02 | 125 | -- | -- |
| 234.27 | 0.718 | 7.86 | 2.93 | 0.5 | -- | 0.331 | -- | 0.209 | 13.9 | -- | -- | -- | -- |
| 234.5 | 0.717 | 7.85 | 2.94 | 0.5 | -- | -- | -- | 0.21 | 13.5 | -- | -- | -- | -- |
| 213.26 | 0.68 | 7.87 | 2.75 | -- | 1.24 | -- | -- | 0.164 | -- | 26 | 91 | -- | -- |
| 394.85 | 0.925 | 7.97 | -- | 0.684 | 1.92 | -- | -- | -0.344 | 6.98 | 23.17 | 253 | -- | -- |
| 249.81 | 0.739 | 7.86 | 2.92 | -- | -- | -- | -- | 0.199 | -- | -- | -- | -- | -- |
| 461.99 | 1.01 | 7.93 | -- | 0.448 | -- | -- | -- | -0.118 | 13.3 | -- | -- | -- | -- |
| 405.76 | 0.938 | 7.98 | -- | -- | 1.65 | -- | -- | -0.319 | -- | 22.42 | 14 | -- | -- |
| 474.42 | 1.02 | 7.93 | -- | -- | -- | -- | -- | -0.125 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 197.32 | radiation | 10 | 720 | < th | dose independent | sin | 4 | NA |
| 4 | 198.69 | radiation | 10 | 720 | < th | dose independent | rect. | 4 | 21 |
| 5 | 198.81 | temperature | 25 | 270 | > th | dose dependent | sin | 1 | NA |
| 9 | 199.10 | radiation | 10 | 720 | < th | dose independent | rect. | 3 | 10 |
| 13 | 199.40 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 14 |
| 17 | 199.70 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 12 |
| 18 | 199.75 | radiation | 10 | 720 | < th | dose independent | rect. | 23 | 16 |
| 19 | 199.76 | temperature | 25 | 90 | > th | dose dependent | sin | 22 | NA |
| 23 | 199.86 | radiation | 10 | 720 | < th | dose independent | rect. | 23 | 14 |
| 30 | 200.00 | radiation | 10 | 720 | < th | dose independent | rect. | 3 | 12 |
| 31 | 200.05 | temperature | 25 | 30 | > th | dose dependent | rect. | 11 | 20 |
| 32 | 200.05 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 35 | 200.09 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 22 |
| 36 | 200.15 | radiation | 10 | 720 | < th | dose independent | rect. | 1 | 14 |
| 42 | 200.32 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 9 |
| 45 | 200.34 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 61 | 200.54 | temperature | 25 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 64 | 200.58 | radiation | 10 | 720 | < th | dose independent | rect. | 1 | 12 |
| 65 | 200.59 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 8 |
| 87 | 200.86 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 4 |
| 127 | 201.17 | temperature | 25 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 316 | 202.25 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 317 | 202.25 | radiation | 10 | 720 | < th | dose dependent | sin | 3 | NA |
| 320 | 202.27 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 326 | 202.30 | temperature | 30 | 270 | < th | dose independent | sin | 1 | NA |
| 331 | 202.32 | radiation | 10 | 720 | < th | dose dependent | rect. | 3 | 12 |
| 376 | 202.60 | temperature | 25 | 30 | > th | dose dependent | rect. | 11 | 7 |
| 389 | 202.64 | radiation | 10 | 720 | < th | dose independent | rect. | 5 | 3 |
| 549 | 203.52 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 9 |
| 553 | 203.53 | radiation | 10 | 720 | < th | dose dependent | rect. | 5 | 20 |
| 561 | 203.56 | radiation | 10 | 720 | < th | dose dependent | rect. | 23 | 16 |
| 614 | 203.79 | temperature | 30 | 270 | > th | dose independent | sin | 3 | NA |
| 662 | 204.01 | temperature | 30 | 270 | > th | dose independent | rect. | 9 | 7 |
| 676 | 204.07 | radiation | 10 | 720 | < th | dose independent | no | NA | NA |
| 685 | 204.14 | radiation | 10 | 720 | < th | dose dependent | rect. | 1 | 15 |
| 754 | 204.42 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 22 |
| 755 | 204.42 | radiation | 20 | 720 | < th | dose dependent | rect. | 23 | 14 |
| 780 | 204.51 | radiation | 10 | 720 | < th | dose independent | rect. | 11 | 23 |
| 782 | 204.52 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 23 |
| 921 | 205.23 | radiation | 40 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 951 | 205.33 | radiation | 40 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 976 | 205.39 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 5 |
| 983 | 205.40 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 12 |
| 994 | 205.46 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 999 | 205.48 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 13 |