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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0123400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.61 (0.0418) R2 : 0.292
β1 : -0.713 (0.153) R2dD : 0.0351 R2D : 0.0189
β2 : 1.33 (0.104) R2dC : 0.255 R2C : 0.251
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.22 (0.089) R2dN8 : 0.0127 R2N8 : 0.00193
σ : 0.784
deviance : 280.51
__
_____
C
peak time of C : 20.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
271.75 0.775 3.63 -0.838 1.34 -0.488 -0.937 0.296 -0.29 20.8 1015 4344 -- --
271.88 0.768 3.63 -0.811 1.34 -0.498 -0.933 -- -0.286 20.8 1015 4528 -- --
274.65 0.772 3.63 -0.81 1.33 -0.5 -- 0.272 -0.293 20.8 1015 4281 -- --
274.71 0.772 3.63 -0.772 1.34 -0.529 -- -- -0.283 20.8 1015 4269 -- --
376.09 0.903 3.59 -0.782 -- -0.418 -- 0.377 -0.285 -- 1015 3975 -- --
277.63 0.781 3.61 -0.744 1.32 -- -0.926 -- -0.22 20.8 -- -- -- --
280.51 0.784 3.61 -0.713 1.33 -- -- -- -0.22 20.8 -- -- -- --
376.35 0.904 3.59 -0.773 -- -0.367 -- -- -0.283 -- 1015 4823 -- --
288.61 0.791 3.61 -- 1.34 -0.429 -- -- -0.192 20.8 1014 4163 -- --
380.74 0.912 3.58 -0.714 -- -- -- -- -0.229 -- -- -- -- --
293.91 0.802 3.59 -- 1.33 -- -- -- -0.14 20.8 -- -- -- --
389.95 0.92 3.57 -- -- -0.401 -- -- -0.195 -- 1014 3944 -- --
394.18 0.927 3.56 -- -- -- -- -- -0.15 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 259.46 wind 1.0 90 < th dose dependent rect. 2 1
2 262.30 wind 1.0 90 < th dose independent rect. 2 1
3 263.45 wind 1.0 1440 > th dose dependent rect. 6 1
4 263.49 wind 3.0 1440 > th dose independent rect. 6 1
5 263.50 wind 9.0 1440 < th dose dependent rect. 6 1
8 263.80 wind 3.0 1440 < th dose independent rect. 6 1
9 263.85 wind 1.0 10 < th dose independent rect. 2 1
10 264.04 wind 3.0 1440 > th dose independent rect. 5 3
16 264.37 wind 3.0 1440 < th dose independent rect. 4 4
18 264.42 wind 1.0 14400 < th dose independent rect. 6 1
19 264.43 wind 1.0 1440 > th dose dependent rect. 4 4
24 264.55 wind 9.0 1440 < th dose dependent rect. 4 4
34 264.82 wind 7.0 1440 > th dose dependent rect. 4 4
46 265.29 wind 7.0 1440 > th dose independent rect. 4 1
49 265.29 wind 7.0 1440 > th dose dependent rect. 4 1
58 265.65 humidity 90.0 30 > th dose independent rect. 2 1
63 265.74 wind 1.0 14400 > th dose independent rect. 6 1
64 265.76 temperature 20.0 30 > th dose dependent rect. 2 1
65 265.77 atmosphere 1005.0 270 > th dose independent rect. 23 2
66 265.83 humidity 80.0 30 > th dose dependent rect. 2 1
67 265.84 wind 1.0 14400 < th dose dependent rect. 6 1
73 265.97 temperature 20.0 30 > th dose independent rect. 2 1
75 266.00 temperature 25.0 10 > th dose independent rect. 6 14
80 266.13 wind 1.0 14400 < th dose independent rect. 5 3
86 266.20 wind 1.0 14400 < th dose dependent rect. 5 3
92 266.31 wind 7.0 1440 > th dose independent rect. 7 1
97 266.38 atmosphere 1005.0 90 > th dose independent rect. 23 4
106 266.45 humidity 70.0 14400 > th dose independent rect. 8 1
110 266.51 atmosphere 1015.0 30 < th dose dependent rect. 2 1
125 266.72 wind 1.0 14400 > th dose independent rect. 5 3
126 266.77 wind 9.0 30 < th dose independent rect. 2 1
127 266.77 temperature 10.0 30 > th dose independent rect. 2 1
129 266.77 temperature 30.0 30 < th dose independent rect. 2 1
130 266.77 humidity 50.0 30 > th dose independent rect. 2 1
133 266.77 atmosphere 995.0 30 > th dose independent rect. 2 1
134 266.77 atmosphere 1010.0 30 < th dose independent rect. 2 1
136 266.77 radiation 1.0 30 < th dose independent rect. 2 1
141 266.77 precipitation 0.1 30 < th dose independent rect. 2 1
142 266.77 temperature 10.0 30 > th dose independent rect. 3 23
143 266.77 radiation 1.0 30 < th dose dependent rect. 2 1
148 266.77 precipitation 0.1 30 < th dose dependent rect. 2 1
149 266.78 wind 5.0 30 < th dose independent rect. 2 1
152 266.82 wind 7.0 1440 > th dose dependent rect. 7 1
165 266.95 atmosphere 995.0 30 > th dose dependent rect. 2 1
175 267.09 wind 7.0 1440 < th dose independent rect. 4 5
212 267.59 humidity 70.0 14400 < th dose independent rect. 8 1
218 267.60 temperature 25.0 10 < th dose independent rect. 4 13
220 267.61 humidity 80.0 14400 < th dose dependent rect. 8 1
222 267.65 wind 1.0 10 < th dose independent rect. 21 6
230 267.67 precipitation 0.1 14400 < th dose independent rect. 21 1
232 267.67 precipitation 0.1 14400 < th dose dependent rect. 21 1
236 267.68 precipitation 0.1 1440 < th dose independent rect. 23 1
237 267.68 precipitation 0.1 1440 < th dose dependent rect. 23 1
240 267.71 humidity 90.0 1440 > th dose independent rect. 18 1
242 267.71 atmosphere 995.0 43200 < th dose independent rect. 17 16
244 267.72 precipitation 0.1 14400 > th dose independent rect. 21 1
247 267.73 atmosphere 995.0 43200 > th dose independent rect. 17 16
250 267.75 radiation 20.0 43200 > th dose independent rect. 17 1
263 267.75 radiation 20.0 43200 > th dose dependent rect. 17 1
267 267.75 temperature 25.0 90 > th dose dependent rect. 20 4
278 267.76 atmosphere 995.0 43200 > th dose independent rect. 16 18
279 267.76 atmosphere 995.0 43200 < th dose dependent rect. 14 13
282 267.77 temperature 25.0 10 > th dose independent rect. 9 11
284 267.78 radiation 10.0 1440 < th dose dependent rect. 24 5
286 267.80 precipitation 0.1 14400 > th dose dependent rect. 21 1
288 267.82 atmosphere 995.0 43200 < th dose independent rect. 16 18
289 267.85 precipitation 0.1 14400 < th dose independent rect. 15 1
291 267.85 atmosphere 995.0 30 > th dose independent rect. 3 23
292 267.85 precipitation 0.1 30 < th dose independent rect. 3 23
294 267.85 precipitation 0.1 14400 < th dose dependent rect. 15 1
295 267.85 precipitation 0.1 30 < th dose dependent rect. 3 23
306 267.88 radiation 10.0 1440 < th dose independent rect. 24 5
312 267.90 atmosphere 995.0 43200 < th dose dependent rect. 14 18
323 267.97 precipitation 0.1 14400 > th dose independent rect. 14 2
324 267.97 precipitation 0.1 14400 > th dose dependent rect. 14 2
327 267.98 temperature 30.0 30 < th dose dependent rect. 2 1
349 268.06 atmosphere 995.0 43200 > th dose independent sin 11 NA
357 268.10 atmosphere 995.0 43200 < th dose independent sin 11 NA
381 268.21 precipitation 0.1 14400 > th dose dependent rect. 12 4
386 268.27 temperature 15.0 14400 > th dose independent rect. 20 1
391 268.28 humidity 70.0 14400 > th dose independent rect. 1 8
395 268.29 humidity 70.0 14400 > th dose independent rect. 3 6
398 268.30 precipitation 0.1 14400 > th dose independent rect. 12 4
399 268.30 precipitation 0.1 14400 < th dose independent rect. 12 4
401 268.30 precipitation 0.1 14400 < th dose dependent rect. 12 4
414 268.35 wind 1.0 14400 < th dose dependent rect. 19 1
431 268.39 precipitation 0.1 14400 > th dose dependent rect. 18 1
438 268.41 precipitation 0.1 14400 > th dose independent rect. 18 1
439 268.41 humidity 80.0 90 < th dose independent rect. 24 3
447 268.42 humidity 80.0 90 < th dose dependent rect. 24 3
453 268.43 wind 7.0 30 > th dose dependent rect. 12 5
461 268.46 precipitation 0.1 14400 < th dose independent rect. 18 1
462 268.46 precipitation 0.1 14400 < th dose dependent rect. 18 1
506 268.55 atmosphere 1000.0 270 > th dose dependent rect. 23 2
521 268.59 temperature 25.0 10 > th dose independent rect. 3 17
523 268.60 temperature 10.0 1440 > th dose independent rect. 3 1
526 268.60 temperature 30.0 1440 < th dose independent rect. 3 1
530 268.60 humidity 50.0 1440 > th dose independent rect. 3 1
539 268.60 atmosphere 995.0 1440 > th dose independent rect. 3 1
540 268.60 radiation 1.0 1440 < th dose independent rect. 3 1
562 268.60 temperature 10.0 1440 > th dose independent rect. 4 23
565 268.60 radiation 1.0 1440 < th dose dependent rect. 3 1
586 268.63 atmosphere 995.0 43200 < th dose dependent sin 14 NA
591 268.64 temperature 25.0 10 > th dose independent rect. 24 20
595 268.65 wind 1.0 14400 < th dose independent rect. 19 1
605 268.68 precipitation 0.1 43200 < th dose independent rect. 11 1
606 268.68 precipitation 0.1 43200 < th dose dependent rect. 11 1
612 268.70 precipitation 0.1 43200 > th dose independent rect. 11 1
614 268.70 precipitation 0.1 43200 > th dose dependent rect. 11 1
645 268.75 temperature 25.0 30 > th dose independent rect. 20 4
651 268.77 temperature 25.0 10 < th dose independent sin 0 NA
719 268.91 humidity 90.0 1440 > th dose dependent rect. 17 2
724 268.92 temperature 25.0 30 > th dose dependent rect. 22 2
735 268.94 wind 1.0 14400 < th dose independent rect. 22 1
744 268.95 radiation 10.0 14400 < th dose dependent rect. 9 6
746 268.96 wind 5.0 14400 > th dose independent rect. 13 1
805 269.04 temperature 20.0 30 > th dose dependent rect. 24 20
806 269.05 wind 5.0 14400 < th dose independent rect. 13 1
811 269.05 wind 1.0 30 < th dose dependent rect. 15 12
813 269.06 humidity 80.0 14400 < th dose independent rect. 5 3
840 269.09 temperature 10.0 30 > th dose dependent rect. 23 23
841 269.10 humidity 90.0 1440 < th dose independent rect. 17 2
847 269.11 wind 1.0 14400 > th dose independent rect. 19 1
859 269.12 wind 7.0 4320 < th dose independent rect. 23 1
877 269.16 wind 1.0 30 < th dose dependent rect. 21 6
932 269.27 wind 9.0 30 < th dose independent rect. 3 23
941 269.29 radiation 10.0 4320 < th dose independent rect. 22 7
946 269.31 precipitation 0.1 14400 > th dose independent rect. 11 11
951 269.32 precipitation 0.1 14400 < th dose independent rect. 11 11
953 269.32 precipitation 0.1 720 < th dose independent rect. 5 22
956 269.32 precipitation 0.1 14400 < th dose dependent rect. 11 11
958 269.32 precipitation 0.1 720 < th dose dependent rect. 5 22
981 269.38 wind 7.0 10 > th dose independent rect. 12 5
985 269.38 radiation 10.0 43200 < th dose dependent rect. 23 1
988 269.39 wind 1.0 30 > th dose independent rect. 2 1
992 269.39 radiation 10.0 14400 < th dose dependent rect. 10 3