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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0123200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.28 (0.0537) R2 : 0.172
β1 : 0.547 (0.185) R2dD : 0.0187 R2D : -0.0293
β2 : 0.716 (0.114) R2dC : 0.0728 R2C : 0.043
β3 : 18.1 (3.17) R2dE : 2.27 R2E : -1.8
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 34.4 (6.63) R2dD*E : 1.89 R2D*E : -2.22
γ1 : -0.214 (0.102) R2dN8 : 0.0111 R2N8 : 0.00135
σ : 0.893
deviance : 367.43
__
_____
C
peak time of C : 12.5
E
wheather : temperature
threshold : 18.5
memory length : 135
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 21.2
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
369.58 0.903 3.28 0.524 0.717 17.6 0.153 33.4 -0.222 12.5 18.8 131 20.5 --
388.73 0.918 3.12 0.462 0.62 1.25 -0.3 -- -0.184 11.8 20.77 416 1.87 --
367.43 0.893 3.28 0.547 0.716 18.1 -- 34.4 -0.214 12.5 18.5 135 21.2 --
386.53 0.916 3.15 0.533 0.681 1.5 -- -- -0.122 12.4 20.6 387 1.22 --
398.2 0.929 3.3 0.537 -- 23.2 -- 44.3 -0.251 -- 18.49 138 20 --
402.59 0.941 3.16 0.182 0.724 -- -0.157 -- -0.27 12 -- -- -- --
402.7 0.94 3.16 0.176 0.724 -- -- -- -0.271 12.1 -- -- -- --
395.01 0.926 3.15 0.362 -- 1.34 -- -- -0.145 -- 37.33 812 0.387 --
389.42 0.919 3.16 -- 0.627 1.65 -- -- -0.215 12.3 20.7 389 0.165 --
435.73 0.975 3.18 0.154 -- -- -- -- -0.281 -- -- -- -- --
403.52 0.94 3.17 -- 0.722 -- -- -- -0.291 12 -- -- -- --
397.96 0.929 3.17 -- -- 1.18 -- -- -0.232 -- 40.6 505 21.6 --
436.35 0.975 3.18 -- -- -- -- -- -0.298 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 371.47 wind 3.0 90 > th dose dependent rect. 4 1
2 375.81 wind 3.0 90 > th dose independent rect. 4 1
3 379.35 atmosphere 1000.0 10 < th dose independent rect. 5 1
10 379.35 atmosphere 1000.0 10 < th dose dependent rect. 5 1
29 380.52 wind 1.0 270 > th dose dependent rect. 7 2
31 381.38 wind 3.0 270 > th dose independent rect. 8 1
32 381.81 wind 3.0 30 > th dose independent rect. 8 4
34 381.96 wind 1.0 90 < th dose independent rect. 5 9
35 382.07 wind 1.0 90 < th dose independent rect. 5 13
41 382.32 temperature 25.0 270 < th dose dependent rect. 7 1
43 382.37 wind 9.0 90 < th dose dependent rect. 5 13
44 382.54 wind 1.0 270 > th dose independent sin 3 NA
46 382.71 temperature 20.0 270 < th dose dependent rect. 4 5
51 383.08 precipitation 0.1 10 > th dose independent rect. 7 11
55 383.08 precipitation 0.1 10 > th dose dependent rect. 7 11
60 383.15 temperature 15.0 720 > th dose independent rect. 1 7
66 383.35 wind 1.0 90 < th dose dependent rect. 5 9
68 383.40 temperature 25.0 270 < th dose dependent rect. 6 3
70 383.47 wind 1.0 90 < th dose dependent rect. 5 11
80 383.64 wind 1.0 30 > th dose dependent rect. 8 4
82 383.81 temperature 20.0 270 < th dose independent rect. 5 4
84 383.88 temperature 20.0 90 < th dose dependent rect. 4 9
103 384.08 temperature 15.0 720 > th dose independent rect. 20 17
106 384.22 radiation 1.0 30 > th dose dependent rect. 18 12
108 384.29 temperature 20.0 90 < th dose dependent rect. 4 16
111 384.43 radiation 30.0 10 > th dose independent rect. 8 1
117 384.52 atmosphere 1015.0 720 < th dose independent rect. 1 7
149 385.36 radiation 20.0 10 > th dose dependent rect. 8 1
153 385.41 radiation 1.0 30 > th dose dependent rect. 5 1
172 385.62 temperature 15.0 1440 > th dose independent rect. 6 13
181 385.71 wind 1.0 30 > th dose dependent rect. 6 6
188 385.80 temperature 20.0 720 > th dose independent rect. 24 11
203 385.99 wind 7.0 10 < th dose independent rect. 5 14
206 386.03 temperature 20.0 10 < th dose dependent rect. 5 8
215 386.12 temperature 20.0 720 < th dose dependent rect. 3 2
221 386.16 temperature 20.0 720 < th dose dependent rect. 24 6
224 386.19 temperature 20.0 720 < th dose dependent rect. 1 4
226 386.21 wind 1.0 270 < th dose independent rect. 2 15
236 386.24 wind 1.0 270 < th dose independent rect. 2 12
247 386.28 radiation 30.0 90 < th dose independent rect. 8 8
251 386.31 humidity 70.0 1440 > th dose independent rect. 6 1
281 386.56 temperature 20.0 90 < th dose dependent rect. 4 1
283 386.57 radiation 30.0 30 < th dose dependent rect. 8 9
296 386.69 temperature 20.0 10 < th dose dependent rect. 5 15
298 386.70 humidity 80.0 90 < th dose dependent rect. 3 6
305 386.74 temperature 20.0 720 < th dose independent rect. 2 5
307 386.75 atmosphere 1010.0 90 < th dose dependent rect. 5 2
308 386.75 radiation 30.0 90 < th dose dependent rect. 8 7
311 386.76 temperature 20.0 90 < th dose dependent sin 0 NA
319 386.79 temperature 20.0 270 < th dose dependent sin 4 NA
325 386.83 radiation 20.0 30 < th dose independent rect. 8 21
330 386.84 radiation 40.0 10 < th dose independent sin 12 NA
355 386.95 temperature 10.0 720 > th dose dependent rect. 24 11
364 387.01 wind 1.0 270 > th dose independent rect. 6 11
371 387.04 radiation 30.0 1440 < th dose independent rect. 6 1
383 387.06 radiation 1.0 90 < th dose independent rect. 5 13
430 387.26 wind 1.0 270 < th dose independent sin 1 NA
485 387.50 temperature 20.0 720 < th dose dependent sin 7 NA
554 387.70 radiation 30.0 720 < th dose independent rect. 1 7
598 387.82 wind 3.0 90 > th dose independent rect. 2 10
638 387.95 temperature 20.0 720 < th dose independent sin 7 NA
657 388.00 wind 1.0 90 > th dose independent rect. 7 9
675 388.05 temperature 15.0 720 > th dose dependent rect. 24 5
694 388.15 atmosphere 1010.0 10 < th dose dependent rect. 5 3
732 388.30 temperature 20.0 720 > th dose independent sin 6 NA
746 388.34 wind 1.0 270 < th dose dependent sin 1 NA
750 388.35 temperature 15.0 4320 > th dose independent rect. 6 3
780 388.45 humidity 70.0 90 < th dose independent rect. 19 14
787 388.47 wind 7.0 90 < th dose independent rect. 11 22
838 388.61 temperature 20.0 720 > th dose independent rect. 24 4
865 388.68 radiation 30.0 90 > th dose independent rect. 12 1
868 388.69 temperature 20.0 270 < th dose independent sin 3 NA
893 388.78 wind 1.0 270 < th dose dependent rect. 2 15
927 388.88 wind 1.0 90 > th dose dependent rect. 1 11
955 388.95 wind 1.0 270 < th dose dependent rect. 2 12
987 389.03 radiation 40.0 30 < th dose dependent rect. 8 23