Os07g0122400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os07g0122400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.94 | 0.215 | 10.9 | 0.83 | 0.783 | -0.397 | -0.101 | 0.455 | 0.223 | 17.4 | 24.6 | 1304 | -- | -- |
| 20.73 | 0.212 | 10.9 | 0.969 | 0.747 | -0.329 | -0.12 | -- | 0.264 | 17.5 | 22.99 | 1618 | -- | -- |
| 20.96 | 0.213 | 10.9 | 0.83 | 0.783 | -0.398 | -- | 0.453 | 0.222 | 17.4 | 24.6 | 1304 | -- | -- |
| 20.7 | 0.212 | 10.9 | 0.971 | 0.745 | -0.344 | -- | -- | 0.268 | 17.6 | 22.9 | 1607 | -- | -- |
| 32.06 | 0.264 | 10.9 | 0.662 | -- | -0.589 | -- | 0.849 | 0.0909 | -- | 25.66 | 358 | -- | -- |
| 25.7 | 0.238 | 10.9 | 1.1 | 0.738 | -- | -0.0919 | -- | 0.403 | 17.6 | -- | -- | -- | -- |
| 25.73 | 0.238 | 10.9 | 1.1 | 0.738 | -- | -- | -- | 0.403 | 17.6 | -- | -- | -- | -- |
| 32.02 | 0.264 | 10.9 | 0.934 | -- | -0.561 | -- | -- | 0.166 | -- | 25.63 | 330 | -- | -- |
| 26.06 | 0.238 | 10.9 | -- | 0.732 | -0.895 | -- | -- | 0.124 | 17.7 | 18.1 | 47520 | -- | -- |
| 54 | 0.343 | 10.9 | 1.08 | -- | -- | -- | -- | 0.385 | -- | -- | -- | -- | -- |
| 57.77 | 0.356 | 10.9 | -- | 0.72 | -- | -- | -- | 0.28 | 17.7 | -- | -- | -- | -- |
| 54.16 | 0.343 | 10.9 | -- | -- | -0.678 | -- | -- | 0.0552 | -- | 25.76 | 381 | -- | -- |
| 84.69 | 0.43 | 10.9 | -- | -- | -- | -- | -- | 0.265 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.16 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 2 | 20.16 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 4 | 20.29 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 16 | 10 |
| 9 | 20.35 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 16 | 9 |
| 11 | 20.38 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 13 | 20.38 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 14 | 20.38 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 23 | 20.44 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 7 |
| 27 | 20.44 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 1 | 11 |
| 66 | 20.53 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 102 | 20.64 | temperature | 25.0 | 720 | < th | dose independent | rect. | 16 | 20 |
| 103 | 20.65 | temperature | 25.0 | 1440 | < th | dose independent | sin | 14 | NA |
| 124 | 20.69 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 144 | 20.73 | humidity | 70.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 151 | 20.73 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 172 | 20.76 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 174 | 20.76 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 21 | 9 |
| 176 | 20.77 | temperature | 25.0 | 1440 | > th | dose independent | sin | 14 | NA |
| 205 | 20.80 | humidity | 60.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 208 | 20.80 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 24 | 13 |
| 212 | 20.80 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 22 | 5 |
| 256 | 20.84 | humidity | 60.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 259 | 20.84 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 24 | 13 |
| 300 | 20.87 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 306 | 20.87 | temperature | 20.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 325 | 20.88 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 16 | 19 |
| 329 | 20.89 | wind | 7.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 335 | 20.89 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 4 | 2 |
| 348 | 20.90 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 377 | 20.92 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 384 | 20.93 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 403 | 20.94 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 408 | 20.95 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 10 | 16 |
| 461 | 20.98 | temperature | 10.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 476 | 20.99 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 10 | 15 |
| 506 | 21.01 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 524 | 21.02 | wind | 7.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 525 | 21.02 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 17 | 2 |
| 528 | 21.02 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 567 | 21.03 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 594 | 21.05 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 10 | 20 |
| 597 | 21.05 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 11 | NA |
| 603 | 21.06 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 17 | 2 |
| 626 | 21.07 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 10 | 22 |
| 661 | 21.08 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 662 | 21.08 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 678 | 21.09 | temperature | 30.0 | 270 | < th | dose dependent | sin | 9 | NA |
| 704 | 21.10 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 717 | 21.11 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 730 | 21.11 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 751 | 21.12 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 5 | 21 |
| 802 | 21.14 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 5 | 21 |
| 835 | 21.15 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 10 | 22 |
| 931 | 21.19 | temperature | 25.0 | 1440 | < th | dose independent | no | NA | NA |
| 955 | 21.19 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 959 | 21.20 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 986 | 21.20 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |