Os07g0121800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1719, Oryza sativa family protein.
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Os07g0121800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1719, Oryza sativa family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 127 | 0.529 | 9.11 | 2.95 | 0.274 | 0.786 | 0.287 | 1.05 | 0.967 | 7.37 | 31.73 | 12 | -- | -- |
| 130.1 | 0.531 | 9.09 | 2.94 | 0.306 | 0.829 | -0.454 | -- | 1 | 9.65 | 23.16 | 15 | -- | -- |
| 127.15 | 0.525 | 9.11 | 2.95 | 0.267 | 0.777 | -- | 0.957 | 0.972 | 7.31 | 31.2 | 15 | -- | -- |
| 130.93 | 0.533 | 9.11 | 2.94 | 0.354 | 0.823 | -- | -- | 0.97 | 8.63 | 23.05 | 12 | -- | -- |
| 130.61 | 0.532 | 9.11 | 2.96 | -- | 0.76 | -- | 1.01 | 0.991 | -- | 34.22 | 48 | -- | -- |
| 139.52 | 0.554 | 9.12 | 2.92 | 0.647 | -- | 0.912 | -- | 0.951 | 1.62 | -- | -- | -- | -- |
| 142.81 | 0.56 | 9.13 | 2.89 | 0.649 | -- | -- | -- | 0.945 | 1.73 | -- | -- | -- | -- |
| 134.48 | 0.54 | 9.11 | 2.92 | -- | 0.746 | -- | -- | 0.992 | -- | 31.55 | 48 | -- | -- |
| 356 | 0.879 | 9.19 | -- | 0.356 | 0.77 | -- | -- | 0.638 | 7.76 | 20 | 33 | -- | -- |
| 168.43 | 0.606 | 9.12 | 2.92 | -- | -- | -- | -- | 0.96 | -- | -- | -- | -- | -- |
| 362.92 | 0.891 | 9.2 | -- | 0.702 | -- | -- | -- | 0.623 | 1.85 | -- | -- | -- | -- |
| 357.97 | 0.881 | 9.19 | -- | -- | 1.06 | -- | -- | 0.66 | -- | 79.89 | 49 | -- | -- |
| 392.76 | 0.925 | 9.19 | -- | -- | -- | -- | -- | 0.636 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 116.54 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 6 | 116.76 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 13 | 11 |
| 23 | 117.20 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 16 | 7 |
| 40 | 117.44 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 17 | NA |
| 48 | 117.58 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 60 | 117.70 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 61 | 117.70 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 13 | 10 |
| 78 | 117.81 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 86 | 117.87 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 106 | 117.98 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 18 | NA |
| 112 | 118.01 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 144 | 118.14 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 158 | 118.20 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 6 |
| 175 | 118.28 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 239 | 118.40 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 246 | 118.40 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 262 | 118.45 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 270 | 118.48 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 275 | 118.48 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 296 | 118.57 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 300 | 118.57 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 18 |
| 538 | 119.15 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 569 | 119.24 | atmosphere | 1005.0 | 14400 | < th | dose independent | no | NA | NA |
| 592 | 119.30 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 602 | 119.33 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 637 | 119.41 | atmosphere | 1005.0 | 14400 | > th | dose independent | no | NA | NA |
| 640 | 119.41 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 691 | 119.51 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 19 | 23 |
| 692 | 119.51 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 734 | 119.60 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 809 | 119.75 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 835 | 119.81 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 893 | 120.01 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 972 | 120.29 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 9 | 1 |