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Os07g0121200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.9 (0.0385) R2 : 0.79
β1 : 3.92 (0.146) R2dD : 0.375 R2D : 0.382
β2 : 1.81 (0.0967) R2dC : 0.16 R2C : 0.154
β3 : -2.69 (0.211) R2dE : 0.0906 R2E : 0.197
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.05 (0.0858) R2dN8 : 0.104 R2N8 : 0.0631
σ : 0.711
deviance : 233.31
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C
peak time of C : 3.94
E
wheather : radiation
threshold : 1.679
memory length : 1448
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
227.01 0.708 7.85 4.17 1.79 -3.5 0.989 -3.48 1.1 3.86 0.853 1450 -- --
231.89 0.709 7.92 3.82 1.88 -2.88 1.07 -- 1.05 3.6 1.032 1472 -- --
229.41 0.705 7.85 4.13 1.78 -3.46 -- -3.43 1.09 4.02 0.73 1443 -- --
233.31 0.711 7.9 3.92 1.81 -2.69 -- -- 1.05 3.94 1.679 1448 -- --
383.43 0.912 7.86 4.27 -- -3.43 -- -3.48 1.14 -- 1.081 1404 -- --
314.74 0.832 7.82 4.49 1.78 -- 1.22 -- 1.4 4.02 -- -- -- --
318.91 0.836 7.83 4.47 1.79 -- -- -- 1.4 4.11 -- -- -- --
389.24 0.919 7.92 3.99 -- -2.71 -- -- 1.07 -- 2.211 1399 -- --
552.44 1.09 7.97 -- 1.87 -4.94 -- -- 0.581 3.76 0.05 1457 -- --
493.38 1.04 7.83 4.55 -- -- -- -- 1.44 -- -- -- -- --
846.44 1.36 7.94 -- 1.88 -- -- -- 0.899 4.08 -- -- -- --
737.01 1.26 8.04 -- -- -4.68 -- -- 0.497 -- 0.7209 1409 -- --
1038.62 1.5 7.95 -- -- -- -- -- 0.94 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 216.82 radiation 1.0 1440 < th dose dependent rect. 18 23
2 217.91 wind 7.0 43200 > th dose independent rect. 12 6
3 218.29 wind 7.0 43200 < th dose independent rect. 12 6
9 219.00 wind 5.0 43200 > th dose dependent rect. 13 1
13 219.26 radiation 1.0 14400 < th dose dependent rect. 24 5
39 220.80 wind 5.0 43200 > th dose dependent rect. 11 7
40 221.00 radiation 1.0 14400 < th dose dependent rect. 4 1
81 222.89 wind 7.0 14400 > th dose independent rect. 11 2
90 223.28 wind 7.0 14400 < th dose independent rect. 11 2
103 223.90 radiation 40.0 43200 < th dose independent rect. 10 1
122 224.70 wind 7.0 43200 < th dose independent rect. 17 1
133 224.88 precipitation 0.1 14400 < th dose independent rect. 5 2
134 224.88 precipitation 0.1 14400 < th dose dependent rect. 5 2
143 225.12 radiation 1.0 1440 < th dose dependent rect. 11 20
152 225.27 radiation 1.0 1440 < th dose dependent rect. 23 18
159 225.39 radiation 40.0 43200 < th dose independent rect. 15 20
161 225.42 radiation 10.0 43200 < th dose independent rect. 6 1
171 225.57 radiation 1.0 1440 < th dose dependent rect. 2 15
177 225.67 radiation 1.0 1440 < th dose dependent rect. 4 13
183 225.75 wind 7.0 43200 > th dose independent sin 21 NA
190 225.92 wind 1.0 43200 < th dose dependent rect. 19 9
191 225.93 wind 7.0 43200 > th dose independent rect. 16 2
207 226.16 wind 7.0 43200 < th dose independent sin 21 NA
212 226.21 radiation 40.0 43200 < th dose independent rect. 3 8
214 226.22 radiation 40.0 43200 < th dose independent rect. 5 6
216 226.22 radiation 40.0 43200 < th dose independent rect. 1 10
220 226.24 temperature 20.0 14400 > th dose independent rect. 4 1
224 226.24 radiation 40.0 43200 < th dose independent rect. 21 14
234 226.36 wind 7.0 43200 > th dose dependent rect. 11 14
238 226.44 temperature 20.0 14400 < th dose independent rect. 4 1
239 226.44 wind 1.0 43200 < th dose dependent rect. 21 7
261 226.74 radiation 40.0 43200 > th dose dependent rect. 10 1
279 226.90 precipitation 0.1 14400 > th dose dependent rect. 5 2
282 226.94 radiation 10.0 43200 < th dose independent rect. 4 4
285 226.94 radiation 10.0 43200 < th dose independent rect. 1 7
289 226.96 radiation 10.0 43200 < th dose independent rect. 21 11
296 226.98 humidity 90.0 43200 > th dose independent rect. 20 2
299 227.03 precipitation 0.1 14400 > th dose independent rect. 5 2
315 227.23 radiation 40.0 43200 < th dose independent sin 10 NA
326 227.28 radiation 20.0 43200 < th dose independent rect. 17 16
336 227.38 radiation 1.0 1440 < th dose dependent rect. 23 21
344 227.41 radiation 1.0 1440 < th dose dependent rect. 4 23
345 227.42 wind 7.0 43200 > th dose dependent rect. 11 19
348 227.42 radiation 1.0 1440 < th dose dependent rect. 2 23
353 227.48 radiation 1.0 1440 < th dose dependent rect. 4 21
356 227.49 radiation 1.0 1440 < th dose dependent no NA NA
370 227.56 radiation 1.0 1440 < th dose dependent rect. 2 18
387 227.62 radiation 1.0 1440 < th dose dependent rect. 4 16
390 227.63 humidity 90.0 43200 > th dose independent rect. 20 4
422 227.80 wind 5.0 43200 > th dose dependent rect. 16 2
425 227.81 radiation 1.0 1440 < th dose dependent rect. 18 11
457 227.99 radiation 1.0 43200 > th dose dependent rect. 5 1
462 228.04 humidity 90.0 43200 > th dose dependent rect. 20 4
477 228.17 radiation 1.0 1440 > th dose independent rect. 11 20
479 228.20 radiation 1.0 1440 < th dose dependent rect. 16 23
498 228.44 wind 9.0 14400 > th dose independent rect. 5 7
526 228.61 temperature 25.0 14400 > th dose independent rect. 11 1
536 228.67 radiation 1.0 1440 < th dose independent rect. 11 20
571 229.07 radiation 1.0 1440 < th dose dependent sin 2 NA
585 229.19 temperature 25.0 4320 > th dose independent rect. 8 3
627 229.33 radiation 1.0 1440 < th dose dependent rect. 18 9
631 229.35 temperature 25.0 4320 < th dose independent rect. 8 3
651 229.45 precipitation 0.1 14400 < th dose independent rect. 3 5
653 229.45 precipitation 0.1 14400 < th dose dependent rect. 3 5
654 229.49 radiation 40.0 43200 > th dose dependent rect. 15 20
655 229.50 radiation 1.0 43200 > th dose dependent rect. 18 13
659 229.51 radiation 1.0 1440 < th dose independent rect. 18 23
666 229.56 temperature 25.0 14400 < th dose independent rect. 11 1
674 229.58 radiation 40.0 43200 > th dose dependent rect. 7 4
703 229.62 radiation 40.0 43200 > th dose independent rect. 10 1
709 229.66 radiation 1.0 1440 < th dose dependent rect. 18 7
719 229.70 wind 7.0 43200 > th dose independent rect. 11 19
722 229.71 radiation 1.0 1440 < th dose dependent sin 13 NA
727 229.77 radiation 1.0 1440 > th dose independent rect. 18 23
734 229.83 radiation 1.0 1440 < th dose dependent rect. 18 2
766 229.93 wind 9.0 43200 > th dose independent rect. 13 17
773 229.98 wind 1.0 43200 < th dose dependent rect. 13 16
812 230.24 atmosphere 1005.0 43200 > th dose independent rect. 18 1
819 230.29 radiation 40.0 43200 < th dose dependent rect. 5 1
821 230.31 atmosphere 1005.0 43200 < th dose independent rect. 18 1
824 230.31 precipitation 0.1 14400 > th dose independent rect. 3 5
826 230.31 radiation 20.0 43200 < th dose dependent rect. 24 5
831 230.35 temperature 20.0 14400 > th dose independent rect. 24 1
854 230.40 wind 7.0 14400 < th dose independent rect. 4 10
856 230.43 radiation 10.0 43200 < th dose independent sin 11 NA
876 230.52 wind 9.0 43200 < th dose dependent rect. 11 1
919 230.67 radiation 20.0 14400 > th dose dependent rect. 16 15
937 230.78 humidity 90.0 43200 < th dose independent rect. 18 7
956 230.89 precipitation 0.1 14400 > th dose dependent rect. 3 5