Os07g0121000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1719, Oryza sativa family protein.
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Os07g0121000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1719, Oryza sativa family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 188.01 | 0.644 | 7.97 | -2.35 | 1.84 | 0.995 | 1.36 | -12.5 | -0.689 | 18 | 26.14 | 699 | -- | -- |
| 209.83 | 0.675 | 7.74 | -0.485 | 1.92 | -0.438 | -0.162 | -- | -0.257 | 18.1 | 22.5 | 1300 | -- | -- |
| 189.57 | 0.641 | 7.98 | -2.38 | 1.86 | 1.02 | -- | -12.4 | -0.651 | 17.9 | 26.89 | 802 | -- | -- |
| 207.72 | 0.671 | 7.78 | -0.532 | 1.92 | -0.517 | -- | -- | -0.391 | 18.1 | 30.83 | 3038 | -- | -- |
| 303.04 | 0.811 | 7.95 | -2.72 | -- | 2.72 | -- | -14.1 | -0.838 | -- | 25.7 | 504 | -- | -- |
| 217.39 | 0.691 | 7.75 | -0.633 | 1.96 | -- | -0.0133 | -- | -0.305 | 18 | -- | -- | -- | -- |
| 217.39 | 0.69 | 7.75 | -0.633 | 1.96 | -- | -- | -- | -0.305 | 18 | -- | -- | -- | -- |
| 348.71 | 0.87 | 7.75 | -0.933 | -- | 1.54 | -- | -- | -0.466 | -- | 24.9 | 402 | -- | -- |
| 210.32 | 0.675 | 7.76 | -- | 1.93 | -0.595 | -- | -- | -0.328 | 18 | 30.81 | 5814 | -- | -- |
| 416.77 | 0.954 | 7.72 | -0.691 | -- | -- | -- | -- | -0.349 | -- | -- | -- | -- | -- |
| 227.95 | 0.706 | 7.74 | -- | 1.97 | -- | -- | -- | -0.234 | 18 | -- | -- | -- | -- |
| 371.29 | 0.897 | 7.72 | -- | -- | 1.4 | -- | -- | -0.35 | -- | 25 | 391 | -- | -- |
| 429.36 | 0.967 | 7.7 | -- | -- | -- | -- | -- | -0.273 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 182.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 2 | 183.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 4 | 184.80 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 7 | 185.02 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 12 |
| 13 | 186.10 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 1 |
| 16 | 186.29 | wind | 1 | 14400 | < th | dose dependent | rect. | 9 | 3 |
| 21 | 187.31 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 24 | 187.45 | temperature | 25 | 270 | < th | dose dependent | rect. | 4 | 6 |
| 31 | 187.81 | temperature | 25 | 270 | < th | dose dependent | rect. | 5 | 4 |
| 33 | 187.86 | wind | 1 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 34 | 187.92 | wind | 1 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 36 | 188.08 | radiation | 10 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 58 | 188.96 | temperature | 25 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 59 | 188.96 | temperature | 30 | 43200 | > th | dose dependent | rect. | 18 | 16 |
| 60 | 188.97 | temperature | 25 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 64 | 189.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 13 |
| 65 | 189.10 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 16 |
| 69 | 189.17 | temperature | 25 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 71 | 189.22 | temperature | 25 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 72 | 189.22 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 4 |
| 76 | 189.27 | temperature | 30 | 43200 | > th | dose independent | rect. | 18 | 16 |
| 82 | 189.30 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 83 | 189.30 | temperature | 25 | 43200 | < th | dose independent | rect. | 21 | 6 |
| 84 | 189.30 | temperature | 30 | 43200 | < th | dose independent | rect. | 23 | 12 |
| 85 | 189.31 | temperature | 30 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 87 | 189.31 | temperature | 30 | 43200 | < th | dose independent | rect. | 1 | 10 |
| 89 | 189.31 | temperature | 30 | 43200 | < th | dose independent | rect. | 21 | 14 |
| 93 | 189.32 | temperature | 30 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 99 | 189.33 | temperature | 30 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 103 | 189.35 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 118 | 189.35 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 3 |
| 151 | 189.43 | temperature | 30 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 157 | 189.47 | temperature | 25 | 270 | < th | dose dependent | sin | 5 | NA |
| 176 | 189.49 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 242 | 189.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 10 |
| 253 | 189.83 | temperature | 25 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 272 | 189.88 | radiation | 30 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 276 | 189.89 | temperature | 30 | 43200 | > th | dose dependent | sin | 9 | NA |
| 282 | 189.94 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 292 | 189.96 | temperature | 25 | 720 | > th | dose dependent | rect. | 2 | 17 |
| 295 | 189.98 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 13 |
| 328 | 190.08 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 21 |
| 331 | 190.10 | temperature | 25 | 43200 | > th | dose dependent | rect. | 20 | 11 |
| 382 | 190.30 | temperature | 25 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 444 | 190.42 | temperature | 20 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 448 | 190.43 | temperature | 20 | 30 | > th | dose dependent | rect. | 16 | 10 |
| 451 | 190.44 | temperature | 25 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 453 | 190.44 | temperature | 25 | 720 | > th | dose dependent | sin | 23 | NA |
| 458 | 190.45 | radiation | 30 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 464 | 190.45 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 480 | 190.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 10 |
| 531 | 190.61 | temperature | 15 | 10 | > th | dose dependent | rect. | 2 | 14 |
| 546 | 190.65 | temperature | 25 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 578 | 190.69 | wind | 1 | 43200 | < th | dose dependent | rect. | 15 | 10 |
| 591 | 190.70 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 639 | 190.85 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 668 | 190.92 | temperature | 30 | 43200 | > th | dose independent | sin | 9 | NA |
| 670 | 190.93 | temperature | 30 | 43200 | < th | dose independent | sin | 9 | NA |
| 674 | 190.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 731 | 191.11 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 816 | 191.28 | temperature | 30 | 43200 | > th | dose dependent | no | NA | NA |
| 818 | 191.28 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 11 |
| 942 | 191.30 | wind | 1 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 966 | 191.31 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 7 |