Os07g0120900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1719, Oryza sativa family protein.
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Os07g0120900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1719, Oryza sativa family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 124.64 | 0.525 | 6.92 | -1.8 | 0.87 | 0.374 | -0.443 | 2.75 | -0.401 | 17.6 | 29.9 | 1224 | -- | -- |
| 125.37 | 0.521 | 6.85 | -1.31 | 0.905 | 0.644 | -0.259 | -- | -0.303 | 17.6 | 29.8 | 1247 | -- | -- |
| 124.64 | 0.52 | 6.92 | -1.79 | 0.887 | 0.383 | -- | 3.01 | -0.393 | 17.7 | 30 | 1114 | -- | -- |
| 125.52 | 0.522 | 6.86 | -1.28 | 0.888 | 0.67 | -- | -- | -0.391 | 17.7 | 30.87 | 1160 | -- | -- |
| 163.85 | 0.596 | 6.94 | -1.85 | -- | 0.407 | -- | 3.29 | -0.446 | -- | 30.5 | 1224 | -- | -- |
| 147.91 | 0.57 | 6.83 | -1.46 | 0.926 | -- | -0.242 | -- | -0.264 | 17.2 | -- | -- | -- | -- |
| 148.06 | 0.57 | 6.83 | -1.46 | 0.924 | -- | -- | -- | -0.265 | 17.2 | -- | -- | -- | -- |
| 161.26 | 0.591 | 6.84 | -1.26 | -- | 0.729 | -- | -- | -0.402 | -- | 31.1 | 5675 | -- | -- |
| 163.78 | 0.596 | 6.81 | -- | 0.927 | 0.798 | -- | -- | -0.228 | 17.5 | 30.6 | 5755 | -- | -- |
| 192.71 | 0.649 | 6.82 | -1.49 | -- | -- | -- | -- | -0.289 | -- | -- | -- | -- | -- |
| 204.36 | 0.669 | 6.79 | -- | 0.949 | -- | -- | -- | -0.103 | 17.2 | -- | -- | -- | -- |
| 202.12 | 0.662 | 6.84 | -- | -- | 0.916 | -- | -- | -0.319 | -- | 31 | 5658 | -- | -- |
| 251.58 | 0.74 | 6.78 | -- | -- | -- | -- | -- | -0.123 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 2 | 109.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 46 | 115.22 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 10 |
| 52 | 115.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 12 |
| 55 | 115.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 7 |
| 72 | 116.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 76 | 116.13 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 107 | 117.03 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 120 | 117.36 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 5 |
| 124 | 117.43 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 142 | 117.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 195 | 118.85 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 196 | 118.86 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 208 | 119.01 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 209 | 119.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 217 | 119.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 255 | 119.70 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 1 |
| 329 | 120.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 333 | 120.81 | temperature | 15 | 30 | > th | dose dependent | rect. | 4 | 16 |
| 379 | 121.36 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 439 | 121.99 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 2 |
| 458 | 122.22 | temperature | 15 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 464 | 122.27 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 588 | 123.21 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 646 | 123.61 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 4 |
| 675 | 123.78 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 18 |
| 744 | 124.22 | temperature | 30 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 749 | 124.26 | temperature | 30 | 14400 | > th | dose dependent | rect. | 14 | 5 |
| 829 | 124.45 | temperature | 30 | 14400 | > th | dose dependent | sin | 13 | NA |
| 835 | 124.49 | temperature | 30 | 10 | < th | dose independent | rect. | 7 | 23 |
| 841 | 124.52 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 10 |
| 847 | 124.53 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 19 |
| 852 | 124.56 | temperature | 30 | 10 | < th | dose independent | rect. | 9 | 19 |
| 875 | 124.64 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 927 | 124.74 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 939 | 124.77 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 940 | 124.77 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 947 | 124.78 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 6 |