Os07g0120800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1719, Oryza sativa family protein.
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Os07g0120800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1719, Oryza sativa family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.81 | 0.3 | 10.3 | -0.284 | 0.549 | -1.03 | -0.415 | 1.26 | 0.0395 | 22.9 | 29.71 | 97 | -- | -- |
| 42.46 | 0.303 | 10.3 | -0.0679 | 0.55 | -1.04 | -0.171 | -- | 0.0932 | 22.9 | 29.08 | 106 | -- | -- |
| 41.49 | 0.3 | 10.3 | -0.277 | 0.563 | -1.06 | -- | 1.2 | 0.0299 | 22.9 | 29.7 | 99 | -- | -- |
| 42.55 | 0.304 | 10.3 | -0.0661 | 0.547 | -1.05 | -- | -- | 0.0876 | 23 | 28.96 | 111 | -- | -- |
| 47.33 | 0.32 | 10.3 | -0.363 | -- | -1.2 | -- | 1.71 | 0.0408 | -- | 37.34 | 659 | -- | -- |
| 57.19 | 0.355 | 10.2 | 0.193 | 0.481 | -- | -0.324 | -- | 0.304 | 20.5 | -- | -- | -- | -- |
| 57.52 | 0.355 | 10.2 | 0.203 | 0.481 | -- | -- | -- | 0.304 | 20.5 | -- | -- | -- | -- |
| 49.86 | 0.329 | 10.3 | -0.0821 | -- | -1.15 | -- | -- | 0.126 | -- | 46.54 | 678 | -- | -- |
| 42.63 | 0.304 | 10.3 | -- | 0.544 | -1.03 | -- | -- | 0.0989 | 23 | 29.08 | 109 | -- | -- |
| 70.49 | 0.392 | 10.2 | 0.201 | -- | -- | -- | -- | 0.299 | -- | -- | -- | -- | -- |
| 58.6 | 0.358 | 10.3 | -- | 0.48 | -- | -- | -- | 0.281 | 20.6 | -- | -- | -- | -- |
| 49.71 | 0.328 | 10.3 | -- | -- | -1.08 | -- | -- | 0.0962 | -- | 29.7 | 654 | -- | -- |
| 71.55 | 0.395 | 10.2 | -- | -- | -- | -- | -- | 0.277 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 22 |
| 4 | 40.11 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 9 | 40.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 12 | 40.62 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 23 |
| 14 | 40.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 20 | 40.79 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 23 | 40.85 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 29 | 41.06 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 46 | 41.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 49 | 41.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 58 | 41.49 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 68 | 41.60 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 72 | 41.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 84 | 41.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 106 | 42.02 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 142 | 42.39 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 20 |
| 181 | 42.68 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 194 | 42.78 | temperature | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 300 | 43.29 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 313 | 43.32 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 352 | 43.53 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 374 | 43.62 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 408 | 43.71 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 452 | 43.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 518 | 43.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 562 | 44.10 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 750 | 44.41 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 7 |
| 781 | 44.48 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 7 |
| 792 | 44.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 861 | 44.59 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 11 |
| 872 | 44.60 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 11 |
| 881 | 44.61 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 9 |
| 887 | 44.62 | temperature | 25 | 4320 | > th | dose independent | rect. | 13 | 9 |
| 894 | 44.63 | temperature | 25 | 4320 | < th | dose independent | rect. | 14 | 7 |
| 952 | 44.68 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 15 |
| 953 | 44.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 15 |