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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0119400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pectinesterase like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.69 (0.0422) R2 : 0.523
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.11 (0.15) R2dE : 0.458 R2E : 0.478
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.513 (0.0893) R2dN8 : 0.0452 R2N8 : 0.0654
σ : 0.791
deviance : 288.4
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C
peak time of C : --
E
wheather : temperature
threshold : 30.43
memory length : 304
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.0119
open length of G : 10.4

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
262.83 0.762 4.7 -0.556 0.213 2.83 -0.114 -2.17 -0.591 3.26 31.21 306 0.0247 10.3
274.22 0.771 4.71 -0.586 0.224 2.95 -0.431 -- -0.608 3.89 30.44 312 0.033 10.5
262.7 0.755 4.7 -0.564 0.22 2.8 -- -2.18 -0.599 2.78 31.67 309 0.0167 10.4
274.51 0.772 4.72 -0.704 0.247 2.95 -- -- -0.627 1.93 31.44 316 0.0333 10.5
264.44 0.757 4.7 -0.556 -- 2.85 -- -2.19 -0.591 -- 31.74 300 0.00357 10.2
322.85 0.842 4.72 -0.924 1.95 -- -2.28 -- -0.876 7.36 -- -- -- --
337.03 0.86 4.72 -0.975 1.94 -- -- -- -0.872 7.33 -- -- -- --
276.49 0.774 4.71 -0.65 -- 3.01 -- -- -0.602 -- 31.16 302 0.0167 10.3
286.15 0.788 4.69 -- 0.299 3.1 -- -- -0.506 1.82 30.66 329 0.0166 10.7
537.66 1.08 4.76 -0.942 -- -- -- -- -0.84 -- -- -- -- --
362.09 0.89 4.69 -- 1.93 -- -- -- -0.764 7.37 -- -- -- --
288.4 0.791 4.69 -- -- 3.11 -- -- -0.513 -- 30.43 304 0.0119 10.4
561.08 1.11 4.74 -- -- -- -- -- -0.736 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 267.19 temperature 30 270 < th dose dependent rect. 24 10
3 268.88 temperature 20 270 > th dose dependent rect. 23 14
6 269.64 temperature 25 270 < th dose independent rect. 24 11
8 272.04 temperature 20 720 < th dose independent rect. 24 3
10 272.27 temperature 20 270 > th dose dependent sin 6 NA
30 274.87 temperature 25 270 > th dose independent rect. 23 14
35 275.55 temperature 20 720 > th dose independent rect. 23 8
36 275.56 temperature 25 720 < th dose dependent rect. 24 3
41 275.77 temperature 20 270 > th dose dependent rect. 4 9
47 276.16 temperature 25 720 < th dose dependent rect. 24 1
86 278.12 temperature 20 720 > th dose independent rect. 21 12
95 278.33 temperature 25 270 < th dose independent sin 5 NA
96 278.49 temperature 25 270 > th dose independent rect. 5 8
101 278.62 temperature 20 720 > th dose dependent rect. 24 8
121 279.13 temperature 25 270 > th dose independent sin 5 NA
130 279.37 temperature 20 720 < th dose independent rect. 3 1
142 279.72 temperature 20 720 > th dose independent rect. 1 2
175 280.59 temperature 20 720 > th dose dependent rect. 1 2
219 281.71 temperature 30 270 < th dose dependent sin 6 NA
220 281.72 temperature 20 720 > th dose independent sin 9 NA
245 282.10 temperature 25 720 < th dose dependent rect. 3 1
247 282.21 temperature 20 720 < th dose independent sin 8 NA
283 282.82 temperature 30 270 < th dose dependent rect. 24 17
329 283.52 temperature 30 270 < th dose dependent rect. 24 19
403 284.46 temperature 20 30 > th dose dependent rect. 1 15
456 285.25 temperature 20 30 > th dose dependent rect. 23 17
527 286.21 temperature 20 720 > th dose independent rect. 21 19
545 286.44 humidity 90 720 < th dose dependent rect. 3 1
627 287.40 temperature 20 720 < th dose independent rect. 5 1
720 288.18 temperature 20 720 > th dose independent rect. 15 18
725 288.20 temperature 20 30 > th dose dependent rect. 6 10
748 288.41 humidity 90 720 < th dose dependent rect. 2 4
834 289.12 temperature 20 720 > th dose dependent rect. 4 3
868 289.45 humidity 90 720 < th dose independent rect. 3 1