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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0118200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF538 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0348) R2 : 0.00755
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.136 (0.0732) R2dN8 : 0.00975 R2N8 : 0.00755
σ : 0.655
deviance : 196.98
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
188.29 0.645 2.92 -0.307 0.068 0.577 0.392 -1.61 0.0105 2.28 70 5393 -- --
190.66 0.643 2.93 -0.186 0.0414 0.543 0.176 -- 0.0433 2.63 67.07 6733 -- --
188.8 0.64 2.93 -0.331 0.078 0.551 -- -1.59 0.00568 1.52 70 5391 -- --
189.12 0.64 2.88 -0.225 0.0995 0.631 -- -- 0.22 1.26 55 6510 -- --
189.13 0.641 2.92 -0.318 -- 0.593 -- -1.56 0.00809 -- 70.12 5391 -- --
194.39 0.654 2.91 -0.224 0.136 -- 0.151 -- 0.11 23.9 -- -- -- --
194.46 0.653 2.91 -0.229 0.137 -- -- -- 0.11 23.2 -- -- -- --
189.72 0.642 2.88 -0.221 -- 0.68 -- -- 0.225 -- 55.22 6529 -- --
190.3 0.642 2.88 -- 0.102 0.631 -- -- 0.239 23.7 55.21 6536 -- --
195.63 0.654 2.91 -0.226 -- -- -- -- 0.111 -- -- -- -- --
195.84 0.655 2.9 -- 0.135 -- -- -- 0.136 23.1 -- -- -- --
190.96 0.644 2.88 -- -- 0.67 -- -- 0.221 -- 57 6769 -- --
196.98 0.655 2.9 -- -- -- -- -- 0.136 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 180.25 radiation 1.0 90 < th dose independent rect. 14 1
2 180.25 radiation 1.0 90 < th dose dependent rect. 14 1
4 181.90 radiation 1.0 90 > th dose independent rect. 4 1
14 181.90 radiation 1.0 90 > th dose dependent rect. 4 1
30 184.49 wind 1.0 10 < th dose dependent rect. 6 1
35 185.00 radiation 1.0 720 > th dose independent rect. 4 1
45 185.00 radiation 1.0 720 > th dose dependent rect. 4 1
60 185.66 wind 7.0 90 > th dose dependent rect. 14 1
61 185.69 wind 7.0 90 > th dose independent rect. 14 1
62 185.74 wind 7.0 10 > th dose dependent rect. 16 1
69 186.02 humidity 60.0 4320 < th dose independent rect. 16 1
70 186.06 radiation 1.0 270 < th dose independent rect. 8 7
71 186.06 radiation 1.0 270 < th dose dependent rect. 8 7
72 186.07 humidity 60.0 4320 > th dose independent rect. 16 1
75 186.16 humidity 70.0 4320 > th dose independent rect. 22 3
77 186.19 wind 3.0 10 > th dose dependent rect. 24 1
79 186.22 humidity 70.0 4320 > th dose independent rect. 16 16
80 186.22 radiation 20.0 270 < th dose dependent rect. 12 1
82 186.24 humidity 60.0 4320 < th dose dependent rect. 16 1
85 186.31 humidity 70.0 4320 > th dose independent rect. 16 9
88 186.31 humidity 70.0 4320 > th dose independent rect. 16 13
89 186.32 humidity 70.0 4320 > th dose independent rect. 16 7
95 186.42 humidity 70.0 4320 > th dose dependent rect. 5 2
100 186.47 humidity 70.0 4320 > th dose independent rect. 22 5
107 186.52 radiation 20.0 270 < th dose independent rect. 12 15
113 186.59 humidity 70.0 4320 < th dose independent rect. 16 16
119 186.65 radiation 1.0 10 < th dose dependent rect. 6 1
124 186.67 radiation 20.0 270 < th dose independent rect. 12 1
126 186.68 humidity 70.0 4320 < th dose independent rect. 16 5
140 186.71 radiation 1.0 270 < th dose independent rect. 10 5
142 186.71 radiation 1.0 270 < th dose dependent rect. 10 5
163 186.89 wind 7.0 90 > th dose dependent rect. 11 5
170 186.97 radiation 1.0 14400 < th dose independent rect. 9 2
171 186.97 humidity 90.0 90 > th dose dependent rect. 22 2
173 186.99 radiation 1.0 10 < th dose dependent rect. 5 12
180 187.02 wind 7.0 90 > th dose independent rect. 13 3
188 187.06 humidity 70.0 4320 > th dose independent rect. 22 7
189 187.07 radiation 30.0 43200 < th dose independent rect. 17 8
198 187.09 temperature 25.0 720 < th dose independent rect. 13 2
208 187.12 radiation 1.0 14400 > th dose independent rect. 9 2
218 187.16 temperature 25.0 720 < th dose independent rect. 12 4
219 187.16 wind 7.0 90 > th dose independent rect. 11 5
233 187.18 humidity 70.0 4320 > th dose independent sin 13 NA
264 187.21 wind 5.0 90 < th dose independent rect. 6 13
279 187.23 radiation 10.0 4320 < th dose dependent rect. 4 1
283 187.24 humidity 90.0 4320 < th dose independent rect. 23 9
305 187.30 humidity 90.0 4320 < th dose dependent rect. 5 1
306 187.30 radiation 10.0 4320 < th dose dependent rect. 22 7
307 187.30 humidity 80.0 4320 > th dose dependent rect. 24 8
309 187.31 humidity 70.0 4320 < th dose independent sin 13 NA
324 187.32 humidity 90.0 4320 < th dose dependent rect. 21 10
327 187.33 radiation 30.0 43200 < th dose independent rect. 17 10
328 187.33 humidity 90.0 1440 < th dose dependent rect. 23 1
360 187.37 humidity 50.0 4320 > th dose dependent rect. 22 10
388 187.41 radiation 10.0 4320 < th dose dependent rect. 1 4
389 187.41 radiation 20.0 270 < th dose dependent rect. 11 5
395 187.42 radiation 10.0 4320 < th dose dependent rect. 19 10
410 187.45 wind 9.0 90 < th dose dependent rect. 6 9
415 187.47 humidity 50.0 4320 > th dose dependent rect. 24 8
428 187.51 wind 9.0 90 < th dose dependent rect. 6 13
432 187.52 humidity 70.0 4320 < th dose dependent rect. 16 15
448 187.54 humidity 70.0 4320 < th dose dependent rect. 16 5
466 187.55 humidity 90.0 4320 < th dose independent rect. 24 2
525 187.64 radiation 30.0 43200 > th dose independent rect. 15 17
526 187.64 wind 1.0 90 < th dose independent rect. 6 18
564 187.70 humidity 90.0 270 > th dose dependent rect. 11 2
570 187.71 humidity 80.0 90 > th dose dependent rect. 15 1
583 187.72 radiation 40.0 4320 < th dose dependent rect. 22 7
587 187.73 humidity 90.0 270 > th dose independent rect. 11 2
597 187.75 humidity 90.0 4320 < th dose dependent rect. 16 16
633 187.79 wind 5.0 90 < th dose independent rect. 6 9
652 187.79 radiation 40.0 270 < th dose dependent rect. 12 15
660 187.81 wind 1.0 43200 < th dose dependent rect. 23 1
679 187.83 humidity 50.0 1440 > th dose dependent rect. 23 1
696 187.85 precipitation 0.1 90 > th dose independent rect. 23 2
700 187.85 precipitation 0.1 90 > th dose dependent rect. 23 2
705 187.86 wind 5.0 10 > th dose independent rect. 24 2
763 187.88 humidity 50.0 4320 > th dose dependent rect. 16 16
786 187.91 precipitation 0.1 1440 > th dose independent rect. 22 1
788 187.91 precipitation 0.1 1440 > th dose dependent rect. 22 1
805 187.93 humidity 60.0 14400 > th dose independent rect. 20 5
811 187.95 wind 1.0 30 < th dose dependent rect. 23 4
845 187.99 wind 1.0 30 < th dose dependent rect. 22 7
854 188.01 humidity 80.0 90 > th dose independent rect. 15 1
875 188.03 wind 9.0 43200 > th dose dependent rect. 11 1
909 188.06 humidity 50.0 4320 > th dose dependent sin 10 NA
916 188.06 radiation 10.0 10 < th dose dependent rect. 19 23
922 188.08 radiation 10.0 4320 > th dose independent rect. 16 1
923 188.08 radiation 10.0 14400 < th dose dependent rect. 16 1
953 188.09 atmosphere 995.0 30 > th dose dependent rect. 15 15