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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0116900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NADH ubiquinone oxidoreductase, 20 kDa subunit domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.44 (0.036) R2 : 0.344
β1 : 1.55 (0.132) R2dD : 0.205 R2D : 0.124
β2 : 0.645 (0.0876) R2dC : 0.078 R2C : 0.0565
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.653 (0.0769) R2dN8 : 0.139 R2N8 : 0.0551
σ : 0.677
deviance : 209.16
__
_____
C
peak time of C : 2.15
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
188.73 0.645 5.41 1.74 0.596 0.696 -0.91 -0.765 0.764 1.97 73.31 1481 -- --
190.02 0.642 5.42 1.64 0.604 0.681 -0.951 -- 0.737 1.98 73.04 1478 -- --
191.73 0.645 5.4 1.79 0.581 0.73 -- -0.908 0.776 2.16 73.54 1498 -- --
193.4 0.648 5.42 1.67 0.619 0.679 -- -- 0.742 2.21 73.27 1467 -- --
206.48 0.673 5.42 1.64 -- 0.469 -- -1.01 0.683 -- 74 1639 -- --
204.72 0.671 5.44 1.51 0.642 -- -1.08 -- 0.647 1.94 -- -- -- --
209.16 0.677 5.44 1.55 0.645 -- -- -- 0.653 2.15 -- -- -- --
211.52 0.677 5.41 1.7 -- 0.865 -- -- 0.763 -- 73.74 1639 -- --
262.34 0.754 5.42 -- 0.717 0.686 -- -- 0.659 2.24 86 2453 -- --
234 0.715 5.43 1.57 -- -- -- -- 0.668 -- -- -- -- --
272.23 0.772 5.48 -- 0.674 -- -- -- 0.481 2.2 -- -- -- --
272.58 0.771 5.47 -- -- 0.486 -- -- 0.488 -- 82 4620 -- --
299.34 0.808 5.47 -- -- -- -- -- 0.494 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 187.20 atmosphere 1005 30 > th dose dependent rect. 10 9
4 187.77 atmosphere 1005 30 > th dose dependent rect. 7 12
7 188.02 wind 9 1440 < th dose dependent rect. 9 1
8 188.07 wind 1 1440 > th dose dependent rect. 9 1
15 188.62 atmosphere 1005 30 > th dose dependent rect. 7 23
18 188.87 humidity 70 720 > th dose independent rect. 19 12
21 188.92 humidity 70 720 > th dose independent rect. 18 14
22 188.93 atmosphere 1005 30 > th dose dependent rect. 7 21
25 188.99 atmosphere 1005 10 > th dose dependent rect. 10 20
28 189.15 humidity 80 4320 < th dose dependent rect. 20 1
31 189.20 humidity 60 1440 > th dose independent rect. 14 3
33 189.25 humidity 50 720 > th dose dependent rect. 19 12
36 189.35 atmosphere 1005 30 > th dose dependent rect. 10 18
40 189.44 humidity 60 1440 < th dose independent rect. 14 3
48 189.73 temperature 15 1440 > th dose independent rect. 6 5
51 189.78 wind 3 1440 > th dose independent rect. 8 2
54 189.84 atmosphere 1005 10 > th dose dependent rect. 22 21
64 189.97 wind 3 1440 < th dose independent rect. 8 2
77 190.13 atmosphere 1005 30 > th dose dependent sin 20 NA
82 190.17 humidity 70 720 < th dose independent rect. 17 16
95 190.37 humidity 80 1440 < th dose dependent rect. 13 19
99 190.41 wind 3 1440 > th dose independent rect. 7 5
119 190.59 wind 9 1440 < th dose independent rect. 6 5
122 190.61 humidity 80 1440 < th dose dependent rect. 13 9
135 190.72 temperature 15 90 > th dose independent rect. 7 23
141 190.74 atmosphere 995 30 > th dose dependent rect. 7 13
157 190.79 humidity 70 4320 > th dose independent rect. 19 13
177 190.87 humidity 80 720 > th dose independent rect. 20 2
178 190.89 wind 3 1440 < th dose independent rect. 7 5
180 190.89 humidity 50 720 > th dose dependent rect. 19 4
185 190.94 temperature 15 720 > th dose independent rect. 19 4
186 190.94 humidity 60 1440 > th dose independent rect. 14 20
187 190.94 temperature 15 720 > th dose independent rect. 7 22
194 190.97 atmosphere 1005 10 > th dose dependent rect. 10 14
197 190.98 atmosphere 1005 90 > th dose dependent rect. 9 14
198 190.99 wind 3 1440 > th dose independent rect. 5 7
202 191.00 atmosphere 1005 30 > th dose dependent rect. 2 17
205 191.02 atmosphere 1000 14400 > th dose independent rect. 3 2
212 191.06 humidity 80 1440 < th dose dependent sin 15 NA
218 191.08 humidity 80 1440 < th dose dependent rect. 13 4
239 191.13 atmosphere 1000 14400 < th dose independent rect. 13 11
251 191.15 temperature 15 270 > th dose independent rect. 19 12
257 191.17 humidity 70 4320 < th dose independent rect. 19 13
268 191.19 atmosphere 1000 14400 < th dose independent rect. 13 16
269 191.19 humidity 80 90 > th dose independent rect. 12 21
295 191.23 atmosphere 1000 14400 > th dose independent rect. 21 1
296 191.23 atmosphere 1000 14400 < th dose independent rect. 3 2
298 191.23 humidity 80 1440 < th dose dependent rect. 15 2
309 191.26 atmosphere 1000 14400 < th dose independent sin 17 NA
322 191.28 atmosphere 1000 14400 < th dose independent rect. 21 1
323 191.28 atmosphere 1000 14400 > th dose independent rect. 13 11
324 191.28 atmosphere 1000 14400 > th dose independent rect. 11 13
326 191.28 atmosphere 1000 14400 > th dose independent rect. 13 16
364 191.32 humidity 70 720 < th dose independent rect. 17 3
416 191.35 atmosphere 1000 14400 < th dose independent rect. 16 14
448 191.37 atmosphere 1000 14400 < th dose independent rect. 4 21
469 191.38 atmosphere 1005 30 > th dose dependent rect. 10 7
493 191.39 atmosphere 1005 30 > th dose dependent rect. 7 17
505 191.40 atmosphere 1000 14400 < th dose dependent rect. 17 1
525 191.42 atmosphere 1000 14400 > th dose independent sin 18 NA
526 191.42 wind 3 1440 < th dose independent rect. 5 7
552 191.43 atmosphere 1000 14400 > th dose independent rect. 3 21
568 191.44 humidity 70 1440 < th dose independent rect. 15 17
578 191.45 atmosphere 1000 14400 > th dose independent rect. 13 3
589 191.45 atmosphere 1000 14400 < th dose independent rect. 20 23
594 191.46 atmosphere 1000 14400 < th dose independent no NA NA
597 191.46 atmosphere 1000 14400 < th dose independent rect. 13 6
598 191.46 atmosphere 1000 14400 > th dose independent rect. 21 9
599 191.46 atmosphere 1000 14400 < th dose independent rect. 21 9
600 191.46 humidity 70 720 > th dose independent rect. 19 10
605 191.46 humidity 70 1440 > th dose independent rect. 15 17
616 191.47 atmosphere 1000 14400 < th dose independent rect. 13 4
624 191.47 wind 3 720 < th dose independent rect. 4 19
675 191.49 atmosphere 1000 14400 > th dose independent rect. 21 22
684 191.50 humidity 60 1440 > th dose independent rect. 14 8
694 191.50 atmosphere 1000 14400 < th dose independent rect. 18 23
730 191.52 atmosphere 1000 14400 > th dose independent no NA NA
738 191.52 humidity 60 1440 > th dose independent rect. 14 12
749 191.52 humidity 60 720 > th dose dependent rect. 19 2
770 191.54 atmosphere 1000 14400 > th dose independent rect. 13 1
793 191.55 humidity 70 720 > th dose independent rect. 17 7
807 191.55 atmosphere 1000 14400 > th dose independent rect. 16 23
864 191.58 humidity 50 1440 > th dose dependent rect. 13 7
874 191.59 humidity 60 1440 < th dose independent rect. 14 20
881 191.59 atmosphere 1000 14400 > th dose independent rect. 23 23
884 191.60 humidity 70 1440 > th dose independent sin 12 NA
936 191.63 humidity 70 4320 > th dose independent rect. 19 1
975 191.65 temperature 15 270 > th dose independent rect. 11 12