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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0115800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.54 (0.0356) R2 : 0.169
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.72 (0.0749) R2dN8 : 0.218 R2N8 : 0.169
σ : 0.67
deviance : 205.93
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
180.92 0.632 3.57 -0.625 0.425 0.584 -0.456 -2.3 0.602 2.39 40.59 137 -- --
185.73 0.635 3.57 -0.583 0.396 0.752 -0.164 -- 0.607 2.73 46.08 118 -- --
181.51 0.627 3.57 -0.618 0.425 0.574 -- -1.99 0.597 2.61 40.56 136 -- --
184.99 0.633 3.56 -0.542 0.417 0.908 -- -- 0.635 2.65 49.36 138 -- --
189.94 0.642 3.54 -0.545 -- 0.227 -- -2.04 0.644 -- 44.21 136 -- --
191.9 0.649 3.56 -0.615 0.269 -- 0.28 -- 0.647 3.77 -- -- -- --
192.13 0.649 3.56 -0.619 0.27 -- -- -- 0.645 3.59 -- -- -- --
190.07 0.645 3.55 -0.526 -- 1.06 -- -- 0.684 -- 59.99 85 -- --
192.63 0.646 3.55 -- 0.418 1.02 -- -- 0.688 2.7 49.67 144 -- --
196.18 0.654 3.56 -0.608 -- -- -- -- 0.653 -- -- -- -- --
202.23 0.665 3.54 -- 0.257 -- -- -- 0.714 3.6 -- -- -- --
197.16 0.656 3.54 -- -- 1.25 -- -- 0.746 -- 59.99 85 -- --
205.93 0.67 3.54 -- -- -- -- -- 0.72 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 175.73 humidity 70 4320 > th dose independent rect. 19 6
4 175.79 humidity 70 4320 < th dose independent rect. 19 12
7 175.84 humidity 70 4320 > th dose independent rect. 19 12
12 175.95 humidity 70 4320 < th dose independent rect. 19 2
33 177.38 wind 1 14400 > th dose independent rect. 9 1
34 177.60 humidity 50 4320 > th dose independent rect. 16 1
37 177.92 wind 1 14400 < th dose independent rect. 9 1
39 178.09 humidity 70 4320 > th dose independent rect. 21 9
42 178.23 humidity 50 10 > th dose independent sin 8 NA
46 178.49 humidity 70 4320 < th dose dependent rect. 19 12
48 178.53 humidity 80 4320 < th dose dependent rect. 3 3
50 178.56 humidity 80 4320 < th dose independent rect. 3 3
54 178.64 humidity 80 4320 < th dose independent rect. 3 1
55 178.66 wind 1 14400 < th dose dependent rect. 9 1
58 178.74 humidity 70 270 < th dose independent rect. 10 1
61 178.77 humidity 80 4320 > th dose independent rect. 4 1
77 179.01 humidity 70 270 < th dose dependent rect. 10 1
78 179.01 humidity 70 4320 < th dose dependent rect. 19 2
89 179.07 radiation 40 270 > th dose independent rect. 10 1
97 179.43 humidity 70 1440 < th dose dependent rect. 10 1
115 179.73 wind 3 10 < th dose dependent rect. 10 20
120 179.84 atmosphere 1005 30 > th dose dependent rect. 10 5
128 179.97 wind 3 90 < th dose dependent rect. 16 13
133 180.01 temperature 25 720 > th dose dependent rect. 17 2
144 180.10 radiation 40 1440 > th dose independent rect. 10 1
156 180.17 humidity 50 1440 > th dose independent rect. 6 6
157 180.17 wind 3 270 < th dose dependent rect. 21 5
170 180.25 wind 3 10 < th dose dependent rect. 17 13
192 180.46 temperature 25 720 > th dose dependent rect. 17 4
195 180.48 wind 3 270 < th dose dependent rect. 16 10
210 180.61 humidity 60 1440 > th dose independent rect. 10 2
213 180.62 wind 3 270 < th dose dependent rect. 18 8
217 180.64 temperature 25 720 > th dose independent rect. 17 3
218 180.64 wind 3 10 < th dose dependent rect. 21 9
232 180.74 wind 9 4320 > th dose dependent rect. 14 1
270 181.01 wind 3 10 < th dose dependent rect. 14 16
271 181.02 temperature 25 720 > th dose independent rect. 18 1
281 181.07 wind 1 30 > th dose independent rect. 11 23
286 181.08 humidity 80 4320 < th dose dependent sin 11 NA
287 181.08 atmosphere 1005 270 > th dose dependent rect. 10 1
326 181.19 atmosphere 1015 43200 > th dose independent rect. 1 1
330 181.20 wind 3 270 < th dose dependent rect. 10 16
335 181.24 atmosphere 1015 43200 > th dose independent rect. 10 1
385 181.29 atmosphere 1015 43200 < th dose independent rect. 10 1
399 181.33 wind 3 10 < th dose dependent sin 12 NA
409 181.36 humidity 60 1440 > th dose independent rect. 23 14
412 181.39 humidity 60 14400 < th dose independent rect. 6 1
416 181.39 radiation 20 14400 > th dose independent rect. 17 1
474 181.39 humidity 60 14400 < th dose dependent rect. 6 1
478 181.39 radiation 20 14400 > th dose dependent rect. 17 1
549 181.47 wind 5 14400 < th dose independent rect. 17 5
572 181.54 wind 1 30 > th dose independent rect. 15 19
577 181.55 humidity 60 14400 > th dose independent rect. 1 7
586 181.55 radiation 1 720 < th dose dependent rect. 17 8
593 181.57 wind 1 30 > th dose independent rect. 22 12
596 181.57 atmosphere 1015 14400 > th dose dependent rect. 6 1
600 181.58 atmosphere 1015 14400 > th dose dependent rect. 2 3
601 181.58 atmosphere 1015 14400 > th dose dependent rect. 4 4
604 181.58 temperature 25 720 > th dose dependent rect. 16 19
606 181.59 wind 5 14400 > th dose independent rect. 17 5
624 181.63 temperature 25 720 < th dose independent rect. 18 5
626 181.63 wind 1 14400 < th dose dependent rect. 8 5
628 181.64 wind 1 30 > th dose independent rect. 4 6
640 181.67 wind 1 14400 > th dose independent rect. 4 9
661 181.73 atmosphere 1005 30 > th dose dependent rect. 10 9
667 181.74 wind 3 30 < th dose dependent rect. 23 7
698 181.82 temperature 25 1440 < th dose independent rect. 16 8
702 181.83 humidity 60 14400 > th dose independent rect. 3 5
730 181.91 temperature 25 1440 > th dose independent rect. 16 8
748 181.94 temperature 25 1440 > th dose dependent rect. 10 11
756 181.95 wind 5 14400 > th dose dependent rect. 17 1
808 182.03 radiation 1 1440 < th dose independent rect. 17 1
817 182.04 temperature 25 1440 > th dose dependent sin 19 NA
819 182.04 humidity 60 10 < th dose dependent rect. 11 1
821 182.05 temperature 25 720 < th dose independent rect. 18 3
823 182.05 radiation 40 90 > th dose independent rect. 14 22
825 182.05 atmosphere 1015 14400 > th dose dependent rect. 8 1
862 182.10 wind 3 270 < th dose dependent sin 16 NA
871 182.11 radiation 10 1440 > th dose independent rect. 16 15
880 182.12 atmosphere 1010 270 > th dose dependent rect. 12 1
893 182.13 wind 1 14400 < th dose independent rect. 4 9
895 182.13 atmosphere 1010 10 > th dose dependent rect. 12 1
933 182.14 humidity 60 1440 < th dose independent rect. 16 20
942 182.15 radiation 1 1440 > th dose independent rect. 17 1