Os07g0115400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, typical subtype containing protein.
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Os07g0115400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, typical subtype containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 215.98 | 0.69 | 2.97 | -0.0223 | 0.0343 | -3.73 | -0.0962 | -5.86 | -0.0351 | 3.34 | 8.9 | 31 | -- | -- |
| 217.02 | 0.686 | 2.96 | -0.0631 | 0.025 | -2.3 | -0.232 | -- | -0.0323 | 3.96 | 8.8 | 31 | -- | -- |
| 216.01 | 0.685 | 2.98 | -0.0206 | 0.034 | -3.75 | -- | -5.98 | -0.0361 | 3.41 | 8.877 | 31 | -- | -- |
| 217.1 | 0.686 | 2.96 | -0.0574 | 0.035 | -2.24 | -- | -- | -0.0307 | 3.73 | 8.806 | 31 | -- | -- |
| 216.07 | 0.685 | 2.98 | -0.0204 | -- | -3.74 | -- | -6.03 | -0.0345 | -- | 8.898 | 31 | -- | -- |
| 230.29 | 0.711 | 2.97 | -0.191 | 0.0353 | -- | -0.226 | -- | -0.079 | 17.2 | -- | -- | -- | -- |
| 230.39 | 0.711 | 2.97 | -0.191 | 0.0399 | -- | -- | -- | -0.0799 | 14.9 | -- | -- | -- | -- |
| 217.17 | 0.686 | 2.96 | -0.0575 | -- | -2.22 | -- | -- | -0.0299 | -- | 8.812 | 31 | -- | -- |
| 217.19 | 0.686 | 2.95 | -- | 0.0352 | -2.28 | -- | -- | -0.0237 | 3.7 | 8.85 | 31 | -- | -- |
| 230.48 | 0.709 | 2.97 | -0.192 | -- | -- | -- | -- | -0.0809 | -- | -- | -- | -- | -- |
| 231.35 | 0.712 | 2.96 | -- | 0.0436 | -- | -- | -- | -0.0586 | 15 | -- | -- | -- | -- |
| 217.26 | 0.686 | 2.95 | -- | -- | -2.25 | -- | -- | -0.0234 | -- | 8.866 | 31 | -- | -- |
| 231.46 | 0.71 | 2.96 | -- | -- | -- | -- | -- | -0.0596 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 201.89 | wind | 9 | 90 | > th | dose dependent | rect. | 11 | 3 |
| 31 | 205.36 | wind | 9 | 90 | > th | dose independent | rect. | 11 | 3 |
| 42 | 206.03 | wind | 9 | 270 | > th | dose dependent | rect. | 11 | 1 |
| 107 | 209.45 | wind | 9 | 30 | > th | dose dependent | sin | 5 | NA |
| 110 | 210.01 | wind | 9 | 270 | > th | dose independent | rect. | 11 | 1 |
| 115 | 210.27 | wind | 9 | 30 | < th | dose independent | sin | 4 | NA |
| 127 | 211.79 | wind | 9 | 30 | > th | dose independent | sin | 4 | NA |
| 143 | 213.39 | radiation | 10 | 270 | < th | dose dependent | rect. | 10 | 1 |
| 241 | 214.94 | radiation | 10 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 248 | 215.13 | radiation | 10 | 270 | < th | dose independent | rect. | 10 | 1 |
| 271 | 215.25 | wind | 9 | 10 | > th | dose independent | rect. | 13 | 1 |
| 283 | 215.25 | wind | 9 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 333 | 215.40 | radiation | 10 | 270 | < th | dose dependent | rect. | 9 | 7 |
| 374 | 215.72 | radiation | 20 | 270 | < th | dose dependent | rect. | 10 | 5 |
| 453 | 216.25 | radiation | 20 | 270 | < th | dose independent | rect. | 10 | 5 |
| 469 | 216.33 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 3 |
| 522 | 216.73 | wind | 9 | 270 | > th | dose dependent | sin | 7 | NA |
| 556 | 217.19 | wind | 9 | 270 | < th | dose independent | sin | 7 | NA |
| 587 | 217.38 | humidity | 90 | 90 | > th | dose independent | rect. | 16 | 1 |
| 588 | 217.38 | humidity | 90 | 90 | > th | dose dependent | rect. | 16 | 1 |
| 601 | 217.44 | humidity | 70 | 270 | > th | dose independent | rect. | 10 | 7 |
| 604 | 217.47 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 1 |
| 611 | 217.47 | temperature | 20 | 10 | < th | dose dependent | rect. | 17 | 1 |
| 645 | 217.63 | humidity | 80 | 1440 | < th | dose independent | rect. | 22 | 17 |
| 657 | 217.72 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 1 |
| 723 | 218.01 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 728 | 218.11 | wind | 9 | 270 | > th | dose independent | sin | 7 | NA |
| 729 | 218.11 | humidity | 90 | 90 | > th | dose independent | rect. | 15 | 3 |
| 741 | 218.13 | wind | 1 | 90 | < th | dose dependent | rect. | 24 | 1 |
| 746 | 218.17 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 771 | 218.24 | temperature | 25 | 270 | < th | dose independent | rect. | 14 | 1 |
| 782 | 218.35 | wind | 9 | 30 | < th | dose independent | no | NA | NA |
| 796 | 218.38 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 1 |
| 811 | 218.47 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 3 |
| 827 | 218.59 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 17 |
| 863 | 218.64 | radiation | 10 | 720 | < th | dose dependent | rect. | 8 | 15 |
| 864 | 218.65 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 874 | 218.70 | radiation | 10 | 10 | < th | dose independent | rect. | 11 | 5 |
| 881 | 218.72 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 13 |
| 898 | 218.84 | humidity | 70 | 270 | > th | dose independent | rect. | 11 | 16 |
| 958 | 218.93 | humidity | 70 | 270 | > th | dose independent | rect. | 9 | 21 |
| 978 | 218.98 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 999 | 219.04 | humidity | 50 | 270 | > th | dose dependent | rect. | 20 | 22 |