Os07g0114500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0114500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.05 | 0.367 | 7.66 | -1.66 | 0.488 | -1 | -0.346 | -1.49 | -0.982 | 14.8 | 20 | 6802 | -- | -- |
| 62.6 | 0.368 | 7.6 | -1.52 | 0.489 | -0.628 | -0.328 | -- | -0.925 | 14.6 | 21 | 6843 | -- | -- |
| 61.43 | 0.365 | 7.66 | -1.66 | 0.486 | -0.997 | -- | -1.47 | -0.983 | 14.6 | 20.05 | 6808 | -- | -- |
| 62.89 | 0.369 | 7.6 | -1.52 | 0.488 | -0.629 | -- | -- | -0.927 | 14.5 | 21.02 | 6907 | -- | -- |
| 75.18 | 0.404 | 7.67 | -1.68 | -- | -1.07 | -- | -1.59 | -0.984 | -- | 20 | 6811 | -- | -- |
| 71.06 | 0.395 | 7.64 | -1.97 | 0.516 | -- | -0.307 | -- | -1.14 | 14.6 | -- | -- | -- | -- |
| 71.36 | 0.396 | 7.64 | -1.98 | 0.513 | -- | -- | -- | -1.15 | 14.5 | -- | -- | -- | -- |
| 76.91 | 0.408 | 7.59 | -1.51 | -- | -0.685 | -- | -- | -0.926 | -- | 21.1 | 6844 | -- | -- |
| 73.08 | 0.398 | 7.5 | -- | 0.49 | -1.56 | -- | -- | -0.516 | 14.6 | 19.06 | 47520 | -- | -- |
| 86.87 | 0.436 | 7.65 | -2 | -- | -- | -- | -- | -1.16 | -- | -- | -- | -- | -- |
| 174.77 | 0.618 | 7.59 | -- | 0.552 | -- | -- | -- | -0.925 | 14.5 | -- | -- | -- | -- |
| 87.05 | 0.435 | 7.5 | -- | -- | -1.59 | -- | -- | -0.519 | -- | 19.01 | 47327 | -- | -- |
| 192.65 | 0.648 | 7.6 | -- | -- | -- | -- | -- | -0.936 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.95 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 2 | 59.20 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 3 | 60.17 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 9 |
| 6 | 60.51 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 14 | 60.67 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 15 | 60.68 | temperature | 30.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 18 | 60.76 | wind | 1.0 | 43200 | > th | dose independent | rect. | 23 | 7 |
| 22 | 61.01 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 4 |
| 24 | 61.04 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 20 | 15 |
| 31 | 61.13 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 33 | 61.14 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 37 | 61.17 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 42 | 61.20 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 44 | 61.21 | temperature | 30.0 | 30 | < th | dose independent | rect. | 9 | 17 |
| 66 | 61.39 | humidity | 60.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 75 | 61.44 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 1 | 7 |
| 95 | 61.57 | temperature | 30.0 | 90 | < th | dose independent | rect. | 8 | 9 |
| 103 | 61.63 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 113 | 61.74 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 7 |
| 120 | 61.76 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 121 | 61.78 | wind | 1.0 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 122 | 61.78 | temperature | 25.0 | 720 | < th | dose dependent | sin | 8 | NA |
| 123 | 61.78 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 124 | 61.79 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 126 | 61.80 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 129 | 61.81 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 15 |
| 138 | 61.84 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 146 | 61.87 | humidity | 60.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 156 | 61.88 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 23 | 10 |
| 160 | 61.89 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 178 | 61.91 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 14 | 22 |
| 195 | 61.96 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 2 | 2 |
| 198 | 61.96 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 9 | NA |
| 200 | 61.97 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 23 | 6 |
| 205 | 61.98 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 209 | 61.98 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 6 | 17 |
| 220 | 62.00 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 23 | 12 |
| 224 | 62.01 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 250 | 62.06 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 9 |
| 314 | 62.17 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 10 |
| 315 | 62.17 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 20 | 21 |
| 319 | 62.18 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 1 | 16 |
| 327 | 62.19 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 6 | 17 |
| 336 | 62.19 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 3 | 14 |
| 352 | 62.22 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 9 | 8 |
| 398 | 62.28 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 432 | 62.32 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 436 | 62.32 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 438 | 62.33 | temperature | 30.0 | 90 | < th | dose independent | rect. | 8 | 21 |
| 439 | 62.33 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 448 | 62.35 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 455 | 62.35 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 9 | 23 |
| 456 | 62.36 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 478 | 62.38 | humidity | 60.0 | 43200 | < th | dose dependent | no | NA | NA |
| 483 | 62.38 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 22 | 9 |
| 491 | 62.38 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 23 | 23 |
| 496 | 62.39 | humidity | 60.0 | 43200 | < th | dose dependent | sin | 23 | NA |
| 530 | 62.39 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 608 | 62.43 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 612 | 62.43 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 9 | 13 |
| 643 | 62.45 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 17 | 6 |
| 656 | 62.46 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 3 | 20 |
| 658 | 62.46 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 681 | 62.48 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 705 | 62.50 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 710 | 62.50 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 717 | 62.51 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 7 | 21 |
| 737 | 62.53 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 751 | 62.55 | temperature | 20.0 | 4320 | > th | dose independent | sin | 19 | NA |
| 761 | 62.56 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 762 | 62.56 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 6 |
| 770 | 62.56 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 6 |
| 790 | 62.59 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 4 |
| 796 | 62.60 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 11 | 12 |
| 825 | 62.62 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 838 | 62.63 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 21 | 12 |
| 850 | 62.64 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 19 | 14 |
| 853 | 62.64 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 3 | 20 |
| 856 | 62.64 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 872 | 62.65 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 883 | 62.66 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 9 |
| 898 | 62.67 | temperature | 20.0 | 4320 | < th | dose independent | sin | 19 | NA |
| 924 | 62.68 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 7 | 21 |
| 952 | 62.69 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 974 | 62.71 | humidity | 80.0 | 270 | > th | dose independent | rect. | 22 | 9 |
| 975 | 62.71 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 11 | 12 |
| 995 | 62.72 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 19 | 9 |