Os07g0114400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Casein kinase II alpha subunit.
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Os07g0114400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Casein kinase II alpha subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.45 | 0.179 | 12.8 | 0.273 | 0.28 | -0.498 | 0.136 | 1.27 | 0.196 | 21 | 14.7 | 916 | -- | -- |
| 15.32 | 0.184 | 12.9 | 0.0116 | 0.27 | -0.638 | 0.0688 | -- | 0.142 | 17.6 | 13.31 | 834 | -- | -- |
| 14.51 | 0.177 | 12.8 | 0.284 | 0.281 | -0.498 | -- | 1.37 | 0.199 | 21 | 14.34 | 909 | -- | -- |
| 15.33 | 0.184 | 12.9 | 0.0123 | 0.271 | -0.642 | -- | -- | 0.143 | 17.5 | 13.31 | 834 | -- | -- |
| 17.47 | 0.195 | 12.8 | 0.28 | -- | -0.419 | -- | 1.22 | 0.195 | -- | 12.36 | 1331 | -- | -- |
| 19.03 | 0.205 | 12.9 | -0.103 | 0.197 | -- | 0.314 | -- | 0.0515 | 20.8 | -- | -- | -- | -- |
| 19.33 | 0.206 | 12.9 | -0.113 | 0.2 | -- | -- | -- | 0.052 | 20.3 | -- | -- | -- | -- |
| 18.61 | 0.202 | 12.9 | -0.032 | -- | -0.449 | -- | -- | 0.11 | -- | 13.31 | 834 | -- | -- |
| 15.22 | 0.182 | 12.9 | -- | 0.283 | -0.653 | -- | -- | 0.141 | 17.7 | 2.835 | 63 | -- | -- |
| 21.54 | 0.217 | 12.9 | -0.114 | -- | -- | -- | -- | 0.0499 | -- | -- | -- | -- | -- |
| 19.66 | 0.207 | 12.9 | -- | 0.2 | -- | -- | -- | 0.0646 | 20.3 | -- | -- | -- | -- |
| 18.62 | 0.201 | 12.9 | -- | -- | -0.462 | -- | -- | 0.115 | -- | -16.18 | 2 | -- | -- |
| 21.88 | 0.218 | 12.9 | -- | -- | -- | -- | -- | 0.0625 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.36 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 2 | 14.37 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 3 | 14.38 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 11 | 14.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 21 |
| 18 | 14.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 23 | 14.48 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 58 | 14.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 78 | 14.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 17 |
| 88 | 14.58 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 96 | 14.60 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 112 | 14.61 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 11 |
| 155 | 14.63 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 22 |
| 160 | 14.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 184 | 14.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 189 | 14.65 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 208 | 14.67 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 12 |
| 209 | 14.67 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 226 | 14.67 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 227 | 14.68 | temperature | 10 | 1440 | > th | dose dependent | sin | 20 | NA |
| 232 | 14.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 262 | 14.69 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 297 | 14.70 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 333 | 14.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 359 | 14.72 | temperature | 30 | 1440 | < th | dose dependent | sin | 21 | NA |
| 400 | 14.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 17 |
| 499 | 14.77 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 531 | 14.78 | humidity | 90 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 542 | 14.78 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 10 |
| 636 | 14.80 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 637 | 14.81 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 743 | 14.84 | humidity | 90 | 14400 | > th | dose dependent | sin | 13 | NA |
| 849 | 14.86 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |