Os07g0114000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein phosphatase 2C-like.
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Os07g0114000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein phosphatase 2C-like.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 264.82 | 0.765 | 7.44 | 2.49 | 0.891 | 1.77 | -1.22 | -0.661 | 1.07 | 0.557 | 68.74 | 72 | 5.19 | 14.7 |
| 265.08 | 0.758 | 7.45 | 2.47 | 0.911 | 1.8 | -1.08 | -- | 1.04 | 0.609 | 68.1 | 60 | 5.33 | 14.5 |
| 269.77 | 0.765 | 7.44 | 2.51 | 0.915 | 1.81 | -- | -0.171 | 1.05 | 0.284 | 68.17 | 60 | 5.32 | 14.5 |
| 269.82 | 0.765 | 7.44 | 2.51 | 0.919 | 1.83 | -- | -- | 1.05 | 0.357 | 68.24 | 60 | 5.33 | 14.4 |
| 311.59 | 0.822 | 7.44 | 2.6 | -- | 1.6 | -- | -0.0469 | 1.07 | -- | 70.86 | 48 | 5.4 | 15.1 |
| 364.13 | 0.895 | 7.44 | 2.4 | 0.612 | -- | -1.44 | -- | 1.01 | 2.66 | -- | -- | -- | -- |
| 370.99 | 0.902 | 7.44 | 2.43 | 0.605 | -- | -- | -- | 1.02 | 2.14 | -- | -- | -- | -- |
| 308.64 | 0.818 | 7.43 | 2.52 | -- | 1.55 | -- | -- | 1.04 | -- | 71.02 | 45 | 5.41 | 16.2 |
| 436.22 | 0.973 | 7.5 | -- | 0.903 | 1.64 | -- | -- | 0.782 | 0.69 | 68.19 | 62 | 5.27 | 14.8 |
| 392.9 | 0.926 | 7.43 | 2.46 | -- | -- | -- | -- | 1.04 | -- | -- | -- | -- | -- |
| 527.12 | 1.07 | 7.5 | -- | 0.651 | -- | -- | -- | 0.752 | 2.22 | -- | -- | -- | -- |
| 474.84 | 1.01 | 7.47 | -- | -- | 1.48 | -- | -- | 0.837 | -- | 73.75 | 60 | 5.2 | 16.3 |
| 552.42 | 1.1 | 7.49 | -- | -- | -- | -- | -- | 0.765 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 268.49 | humidity | 70 | 90 | > th | dose dependent | rect. | 5 | 15 |
| 5 | 275.95 | humidity | 70 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 8 | 276.85 | humidity | 70 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 10 | 277.23 | humidity | 80 | 90 | > th | dose independent | rect. | 5 | 15 |
| 64 | 289.91 | humidity | 70 | 10 | > th | dose dependent | sin | 21 | NA |
| 86 | 291.75 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 98 | 293.18 | humidity | 80 | 90 | > th | dose independent | rect. | 5 | 18 |
| 100 | 293.38 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 130 | 294.50 | humidity | 70 | 30 | > th | dose independent | rect. | 5 | 23 |
| 147 | 295.37 | humidity | 50 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 187 | 296.76 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 210 | 297.44 | humidity | 70 | 30 | > th | dose independent | rect. | 5 | 21 |
| 236 | 298.06 | humidity | 70 | 270 | > th | dose dependent | rect. | 2 | 22 |
| 257 | 298.63 | humidity | 50 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 277 | 299.05 | humidity | 70 | 270 | > th | dose dependent | rect. | 3 | 20 |
| 282 | 299.17 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 286 | 299.21 | humidity | 50 | 270 | > th | dose dependent | rect. | 13 | 20 |
| 290 | 299.29 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 297 | 299.36 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 301 | 299.43 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 12 |
| 313 | 299.65 | humidity | 80 | 1440 | < th | dose dependent | sin | 5 | NA |
| 326 | 299.84 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 329 | 299.84 | radiation | 10 | 270 | < th | dose dependent | rect. | 5 | 13 |
| 334 | 299.94 | humidity | 80 | 90 | < th | dose independent | sin | 23 | NA |
| 336 | 299.95 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 352 | 300.15 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 357 | 300.25 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 361 | 300.32 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 12 |
| 371 | 300.45 | humidity | 90 | 1440 | < th | dose dependent | rect. | 7 | 7 |
| 377 | 300.46 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 18 |
| 401 | 300.64 | humidity | 90 | 10 | < th | dose dependent | sin | 21 | NA |
| 402 | 300.66 | humidity | 50 | 90 | > th | dose dependent | rect. | 15 | 20 |
| 483 | 301.42 | humidity | 80 | 30 | > th | dose independent | sin | 22 | NA |
| 539 | 301.83 | humidity | 70 | 720 | > th | dose independent | rect. | 5 | 19 |
| 552 | 301.90 | humidity | 70 | 90 | > th | dose dependent | rect. | 5 | 6 |
| 577 | 302.13 | humidity | 90 | 90 | < th | dose dependent | rect. | 22 | 23 |
| 674 | 302.69 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 19 |
| 702 | 302.91 | humidity | 90 | 90 | < th | dose dependent | no | NA | NA |
| 771 | 303.28 | humidity | 50 | 270 | > th | dose dependent | rect. | 15 | 17 |
| 794 | 303.41 | humidity | 90 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 820 | 303.55 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 849 | 303.76 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 857 | 303.79 | radiation | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 892 | 304.03 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 20 |
| 985 | 304.60 | humidity | 90 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 989 | 304.65 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 990 | 304.65 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 21 |