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Os07g0111700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Flavin-containing monooxygenase FMO family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.4 (0.0282) R2 : 0.859
β1 : -0.921 (0.104) R2dD : 0.0255 R2D : 0.03
β2 : 2.85 (0.0861) R2dC : 0.512 R2C : 0.753
β3 : -1.34 (0.101) R2dE : 0.0819 R2E : 0.317
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.041 (0.0603) R2dN8 : 0.000165 R2N8 : 0.000175
σ : 0.528
deviance : 128.61
__
_____
C
peak time of C : 15
E
wheather : radiation
threshold : 0.7598
memory length : 269
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.03
open length of G : 18.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
125.82 0.527 7.4 -0.919 2.84 -1.37 -0.984 -0.769 0.0405 15 0.76 270 1.05 18
126.87 0.525 7.4 -0.902 2.85 -1.36 -0.737 -- 0.0432 15 0.7428 269 1.02 18
128.5 0.528 7.4 -0.936 2.83 -1.37 -- -0.275 0.0332 15 0.76 269 1.07 18
128.61 0.528 7.4 -0.921 2.85 -1.34 -- -- 0.041 15 0.7598 269 1.03 18.1
174.9 0.616 7.43 -1.23 -- -3.32 -- -0.27 -0.075 -- 0.47 461 2.74 24
170.53 0.612 7.42 -0.869 3.57 -- -0.368 -- 0.0313 15.4 -- -- -- --
170.95 0.612 7.42 -0.876 3.57 -- -- -- 0.0291 15.4 -- -- -- --
173.5 0.613 7.42 -1.15 -- -3.38 -- -- -0.103 -- 0.4622 465 6.79 24
151.55 0.573 7.39 -- 2.87 -1.27 -- -- 0.0783 15.1 1.45 264 1.03 18.1
886.84 1.39 7.42 -1.03 -- -- -- -- -0.0652 -- -- -- -- --
191.17 0.647 7.4 -- 3.59 -- -- -- 0.127 15.4 -- -- -- --
207.49 0.671 7.4 -- -- -3.33 -- -- 0.00918 -- 0.6428 455 3.03 24
914.65 1.41 7.39 -- -- -- -- -- 0.0487 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 126.79 radiation 1.0 270 < th dose independent rect. 1 18
2 126.90 radiation 1.0 270 < th dose dependent rect. 1 18
9 129.60 temperature 25.0 270 < th dose independent rect. 1 4
12 130.10 precipitation 0.1 270 < th dose independent rect. 4 23
13 130.10 precipitation 0.1 270 < th dose dependent rect. 4 23
16 131.01 humidity 50.0 270 > th dose independent rect. 1 18
21 131.56 humidity 70.0 10 > th dose dependent rect. 3 18
26 132.27 temperature 25.0 90 < th dose independent rect. 3 3
27 132.28 humidity 50.0 10 > th dose dependent rect. 3 18
34 132.59 temperature 10.0 270 > th dose dependent rect. 21 3
45 133.44 temperature 10.0 270 > th dose dependent rect. 20 5
47 133.70 precipitation 0.1 90 < th dose independent rect. 6 21
48 133.70 precipitation 0.1 90 < th dose dependent rect. 6 21
59 134.07 radiation 20.0 14400 < th dose dependent rect. 22 6
88 135.01 temperature 10.0 10 > th dose dependent rect. 22 5
101 135.27 humidity 50.0 270 > th dose dependent rect. 24 20
102 135.29 humidity 50.0 270 > th dose independent rect. 15 14
112 135.63 wind 9.0 270 < th dose independent rect. 24 21
117 135.88 wind 9.0 90 < th dose independent rect. 3 18
118 135.88 radiation 40.0 270 < th dose dependent rect. 15 14
126 136.07 atmosphere 1015.0 90 < th dose dependent rect. 3 4
128 136.08 precipitation 0.1 90 < th dose independent rect. 21 6
131 136.08 precipitation 0.1 90 < th dose dependent rect. 21 6
134 136.15 precipitation 0.1 270 < th dose independent rect. 21 3
135 136.15 precipitation 0.1 270 < th dose dependent rect. 21 3
143 136.30 temperature 10.0 90 > th dose independent rect. 21 6
144 136.30 temperature 30.0 90 < th dose independent rect. 21 6
145 136.30 humidity 50.0 90 > th dose independent rect. 21 6
148 136.30 atmosphere 995.0 90 > th dose independent rect. 21 6
149 136.30 radiation 1.0 90 < th dose independent rect. 21 6
154 136.30 temperature 10.0 90 > th dose independent rect. 3 18
155 136.30 atmosphere 1015.0 90 < th dose independent rect. 3 18
156 136.30 radiation 1.0 90 < th dose dependent rect. 21 6
161 136.32 wind 9.0 90 < th dose independent rect. 21 6
164 136.40 radiation 1.0 270 < th dose dependent rect. 21 3
166 136.41 temperature 10.0 270 > th dose independent rect. 21 3
168 136.41 temperature 30.0 270 < th dose independent rect. 21 3
169 136.41 humidity 50.0 270 > th dose independent rect. 21 3
172 136.41 atmosphere 995.0 270 > th dose independent rect. 21 3
173 136.41 radiation 1.0 270 < th dose independent rect. 21 3
178 136.41 temperature 10.0 270 > th dose independent rect. 24 21
185 136.44 wind 9.0 270 < th dose independent rect. 3 1
186 136.44 temperature 10.0 270 > th dose independent rect. 3 1
189 136.44 humidity 50.0 270 > th dose independent rect. 3 1
192 136.44 atmosphere 995.0 270 > th dose independent rect. 3 1
193 136.44 atmosphere 1010.0 270 < th dose independent rect. 3 1
195 136.44 radiation 1.0 270 < th dose independent rect. 3 1
201 136.44 temperature 10.0 270 > th dose independent rect. 4 23
202 136.44 radiation 1.0 270 < th dose dependent rect. 3 1
208 136.45 atmosphere 995.0 90 > th dose independent rect. 3 18
210 136.47 wind 9.0 270 < th dose independent rect. 21 3
211 136.48 atmosphere 1015.0 270 < th dose dependent rect. 3 1
216 136.56 atmosphere 1010.0 30 < th dose independent rect. 3 4
224 136.63 wind 9.0 270 < th dose independent rect. 1 19
232 136.74 atmosphere 1015.0 270 < th dose dependent rect. 1 4
238 136.82 wind 5.0 270 < th dose independent rect. 21 3
239 136.85 radiation 20.0 90 < th dose dependent rect. 3 4
242 136.90 wind 9.0 90 < th dose dependent rect. 21 6
243 136.91 atmosphere 1015.0 270 < th dose independent rect. 24 21
244 136.94 wind 9.0 10 < th dose independent rect. 3 19
247 136.97 wind 9.0 10 < th dose dependent rect. 21 6
251 137.02 atmosphere 995.0 270 > th dose independent rect. 24 21
255 137.08 wind 9.0 90 < th dose independent rect. 3 3
256 137.08 temperature 10.0 90 > th dose independent rect. 3 3
259 137.08 humidity 50.0 90 > th dose independent rect. 3 3
262 137.08 atmosphere 995.0 90 > th dose independent rect. 3 3
265 137.08 radiation 20.0 90 < th dose independent rect. 3 3
268 137.08 temperature 10.0 90 > th dose independent rect. 6 21
269 137.09 atmosphere 995.0 270 > th dose independent rect. 1 19
272 137.12 humidity 50.0 270 > th dose dependent rect. 15 15
274 137.14 precipitation 0.1 270 < th dose independent rect. 3 1
275 137.14 precipitation 0.1 270 < th dose dependent rect. 3 1
279 137.18 precipitation 0.1 10 < th dose independent rect. 22 5
280 137.18 precipitation 0.1 10 < th dose dependent rect. 22 5
281 137.20 wind 7.0 10 < th dose independent rect. 22 5
284 137.22 radiation 10.0 270 < th dose independent rect. 1 5
286 137.25 temperature 10.0 10 > th dose independent rect. 22 5
287 137.25 temperature 30.0 10 < th dose independent rect. 22 5
288 137.25 humidity 50.0 10 > th dose independent rect. 22 5
291 137.25 atmosphere 995.0 10 > th dose independent rect. 22 5
292 137.25 radiation 1.0 10 < th dose independent rect. 22 5
297 137.25 temperature 10.0 10 > th dose independent rect. 3 19
299 137.25 atmosphere 1015.0 10 < th dose independent rect. 3 19
300 137.25 radiation 1.0 10 < th dose dependent rect. 22 5
305 137.27 radiation 30.0 270 < th dose independent rect. 15 14
320 137.30 temperature 10.0 270 > th dose independent rect. 1 19
321 137.30 atmosphere 1015.0 270 < th dose independent rect. 1 19
331 137.34 atmosphere 995.0 10 > th dose independent rect. 3 19
332 137.34 radiation 1.0 270 < th dose dependent sin 2 NA
335 137.36 wind 9.0 270 < th dose dependent rect. 21 3
340 137.43 temperature 30.0 270 < th dose dependent rect. 1 4
344 137.50 wind 9.0 10 < th dose independent rect. 3 4
345 137.50 temperature 10.0 10 > th dose independent rect. 3 4
348 137.50 humidity 50.0 10 > th dose independent rect. 3 4
351 137.50 atmosphere 995.0 10 > th dose independent rect. 3 4
353 137.50 radiation 20.0 10 < th dose independent rect. 3 4
356 137.50 temperature 10.0 10 > th dose independent rect. 7 20
358 137.51 precipitation 0.1 90 < th dose independent rect. 3 3
359 137.51 precipitation 0.1 90 < th dose dependent rect. 3 3
387 137.60 radiation 10.0 270 < th dose dependent rect. 1 5
416 137.74 atmosphere 1010.0 270 < th dose independent rect. 1 5
418 137.75 wind 1.0 270 > th dose independent rect. 21 3
433 137.85 temperature 30.0 270 < th dose independent rect. 15 15
436 137.87 temperature 10.0 270 > th dose independent rect. 1 5
439 137.87 humidity 50.0 270 > th dose independent rect. 1 5
442 137.87 atmosphere 995.0 270 > th dose independent rect. 1 5
447 137.87 temperature 10.0 270 > th dose independent rect. 6 19
448 137.87 humidity 50.0 10 > th dose dependent rect. 22 5
451 137.89 wind 9.0 270 < th dose independent rect. 1 5
460 137.94 humidity 50.0 10 > th dose dependent rect. 3 4
464 137.96 temperature 30.0 90 < th dose dependent rect. 3 3
465 137.96 humidity 50.0 90 > th dose dependent rect. 21 6
466 137.98 precipitation 0.1 270 < th dose independent rect. 1 5
467 137.98 precipitation 0.1 270 < th dose dependent rect. 1 5
540 138.13 radiation 30.0 1440 < th dose independent rect. 4 3
545 138.17 humidity 90.0 90 > th dose independent rect. 3 18
553 138.20 wind 9.0 90 < th dose independent rect. 6 21
603 138.36 wind 9.0 1440 < th dose independent rect. 4 4
604 138.36 temperature 10.0 1440 > th dose independent rect. 4 4
607 138.36 temperature 30.0 1440 < th dose independent rect. 4 4
611 138.36 humidity 50.0 1440 > th dose independent rect. 4 4
616 138.36 atmosphere 995.0 1440 > th dose independent rect. 4 4
617 138.36 atmosphere 1015.0 1440 < th dose independent rect. 4 4
619 138.36 temperature 10.0 1440 > th dose independent rect. 8 20
628 138.38 humidity 50.0 270 > th dose dependent rect. 3 1
685 138.47 temperature 10.0 1440 > th dose independent rect. 23 5
688 138.47 temperature 30.0 1440 < th dose independent rect. 23 5
692 138.47 humidity 50.0 1440 > th dose independent rect. 23 5
701 138.47 atmosphere 995.0 1440 > th dose independent rect. 23 5
702 138.47 radiation 1.0 1440 < th dose independent rect. 23 5
722 138.47 temperature 10.0 1440 > th dose independent rect. 4 19
779 138.52 wind 9.0 270 < th dose independent rect. 10 10
819 138.63 temperature 10.0 90 > th dose dependent rect. 6 21
820 138.64 humidity 90.0 10 > th dose independent rect. 3 19
822 138.65 radiation 1.0 270 < th dose independent rect. 1 8
831 138.69 wind 1.0 270 > th dose independent rect. 20 5
836 138.69 temperature 10.0 10 > th dose dependent rect. 7 20
890 138.81 wind 9.0 10 < th dose dependent rect. 3 4
892 138.82 wind 9.0 270 < th dose dependent rect. 3 1
895 138.84 humidity 50.0 270 > th dose independent rect. 10 10
916 138.97 wind 1.0 270 > th dose independent rect. 2 2
942 139.02 radiation 1.0 270 < th dose independent sin 2 NA
989 139.10 temperature 20.0 270 > th dose independent rect. 21 3