Os07g0111600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Purple acid phosphatase.
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Os07g0111600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Purple acid phosphatase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.67 | 0.192 | 12.3 | -0.739 | 0.0384 | -0.558 | -0.46 | -0.393 | -0.263 | 10.2 | 25.8 | 77 | -- | -- |
| 16.85 | 0.191 | 12.3 | -0.808 | 0.0505 | -0.533 | -0.406 | -- | -0.277 | 9.1 | 25.99 | 75 | -- | -- |
| 17.3 | 0.194 | 12.3 | -0.79 | 0.0712 | -0.551 | -- | -0.15 | -0.274 | 7.13 | 26.32 | 87 | -- | -- |
| 17.32 | 0.194 | 12.3 | -0.83 | 0.0675 | -0.57 | -- | -- | -0.284 | 6.58 | 26.28 | 77 | -- | -- |
| 17.51 | 0.195 | 12.3 | -0.802 | -- | -0.54 | -- | -0.0976 | -0.275 | -- | 25.79 | 69 | -- | -- |
| 21.44 | 0.217 | 12.3 | -0.679 | 0.118 | -- | -0.319 | -- | -0.164 | 11.6 | -- | -- | -- | -- |
| 21.85 | 0.219 | 12.3 | -0.691 | 0.121 | -- | -- | -- | -0.165 | 12.3 | -- | -- | -- | -- |
| 17.53 | 0.195 | 12.3 | -0.819 | -- | -0.543 | -- | -- | -0.281 | -- | 25.76 | 59 | -- | -- |
| 33.56 | 0.271 | 12.3 | -- | 0.0675 | -0.292 | -- | -- | -0.122 | 10.5 | 56.58 | 4 | -- | -- |
| 22.78 | 0.223 | 12.3 | -0.695 | -- | -- | -- | -- | -0.166 | -- | -- | -- | -- | -- |
| 34.44 | 0.275 | 12.3 | -- | 0.132 | -- | -- | -- | -0.0876 | 12.6 | -- | -- | -- | -- |
| 33.81 | 0.272 | 12.3 | -- | -- | -0.339 | -- | -- | -0.127 | -- | 56.58 | 4 | -- | -- |
| 35.53 | 0.278 | 12.3 | -- | -- | -- | -- | -- | -0.0893 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.66 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 7 | 16.14 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 21 |
| 19 | 16.44 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 25 | 16.51 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 51 | 16.71 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 55 | 16.72 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 67 | 16.76 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 69 | 16.76 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 70 | 16.76 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 77 | 16.77 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 82 | 16.78 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 83 | 16.78 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 98 | 16.81 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 131 | 16.88 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 145 | 16.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 159 | 16.94 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 167 | 16.97 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 319 | 17.22 | temperature | 15 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 375 | 17.28 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 433 | 17.34 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 458 | 17.37 | temperature | 25 | 720 | < th | dose dependent | sin | 19 | NA |
| 494 | 17.40 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 516 | 17.42 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 529 | 17.43 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 13 |
| 530 | 17.43 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 15 |
| 563 | 17.45 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 584 | 17.46 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 629 | 17.50 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 653 | 17.52 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 654 | 17.52 | temperature | 10 | 90 | > th | dose dependent | sin | 8 | NA |
| 693 | 17.55 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 697 | 17.56 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 9 |
| 735 | 17.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 6 |
| 795 | 17.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 802 | 17.63 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 803 | 17.63 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 23 |
| 889 | 17.68 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 903 | 17.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 916 | 17.71 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 919 | 17.71 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 948 | 17.73 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 4 |