Os07g0111400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WRKY transcription factor 29.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0111400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : WRKY transcription factor 29.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 412.92 | 0.955 | 6.35 | 12.6 | 0.833 | 0.477 | 0.312 | -8.61 | 2.78 | 3.07 | 19.4 | 4464 | -- | -- |
| 428.6 | 0.964 | 6.68 | 12.3 | 0.82 | 3.14 | -0.121 | -- | 2.47 | 3.23 | 12.9 | 14832 | -- | -- |
| 412.22 | 0.946 | 6.37 | 12.5 | 0.872 | 0.537 | -- | -8.54 | 2.76 | 3.12 | 19.33 | 4076 | -- | -- |
| 427.69 | 0.963 | 6.67 | 12.4 | 0.811 | 3.19 | -- | -- | 2.55 | 3.07 | 13 | 14942 | -- | -- |
| 452.31 | 0.991 | 6.38 | 12.6 | -- | 0.498 | -- | -8.76 | 2.76 | -- | 19.42 | 3548 | -- | -- |
| 597.35 | 1.15 | 6.8 | 10.1 | 0.809 | -- | 0.419 | -- | 1.95 | 2.94 | -- | -- | -- | -- |
| 597.87 | 1.15 | 6.81 | 10.1 | 0.815 | -- | -- | -- | 1.94 | 3.11 | -- | -- | -- | -- |
| 466.06 | 1.01 | 6.67 | 12.4 | -- | 3.2 | -- | -- | 2.56 | -- | 13 | 14811 | -- | -- |
| 3277.27 | 2.68 | 7.07 | -- | 1.06 | -3.84 | -- | -- | 0.793 | 2.97 | 14.54 | 7018 | -- | -- |
| 635.77 | 1.18 | 6.8 | 10.2 | -- | -- | -- | -- | 1.97 | -- | -- | -- | -- | -- |
| 3306.33 | 2.69 | 7.06 | -- | 1.02 | -- | -- | -- | 0.815 | 3.14 | -- | -- | -- | -- |
| 1476.14 | 1.79 | 7.55 | -- | -- | -6.37 | -- | -- | -1.35 | -- | 21.7 | 47520 | -- | -- |
| 3365.11 | 2.71 | 7.06 | -- | -- | -- | -- | -- | 0.837 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 377.19 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 17 |
| 3 | 377.41 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 17 |
| 7 | 377.90 | wind | 3 | 43200 | < th | dose dependent | rect. | 24 | 16 |
| 9 | 378.04 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 63 | 380.53 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 20 |
| 69 | 380.79 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 21 |
| 71 | 380.84 | wind | 5 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 103 | 381.38 | wind | 3 | 43200 | < th | dose dependent | sin | 2 | NA |
| 124 | 381.81 | wind | 3 | 43200 | < th | dose dependent | rect. | 15 | 22 |
| 125 | 381.83 | wind | 3 | 43200 | < th | dose independent | sin | 1 | NA |
| 128 | 381.90 | humidity | 80 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 132 | 381.95 | humidity | 80 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 133 | 381.96 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 157 | 382.32 | wind | 5 | 43200 | < th | dose dependent | rect. | 14 | 18 |
| 175 | 382.61 | humidity | 80 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 181 | 382.77 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 22 |
| 195 | 382.94 | wind | 3 | 43200 | > th | dose independent | sin | 1 | NA |
| 215 | 383.22 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 22 |
| 224 | 383.31 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 11 |
| 275 | 383.98 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 23 |
| 297 | 384.25 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 308 | 384.39 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 23 |
| 312 | 384.44 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 342 | 384.89 | wind | 3 | 43200 | < th | dose dependent | no | NA | NA |
| 345 | 384.91 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 4 |
| 354 | 384.98 | wind | 3 | 43200 | < th | dose independent | no | NA | NA |
| 376 | 385.27 | wind | 3 | 43200 | > th | dose independent | no | NA | NA |
| 410 | 385.65 | wind | 3 | 43200 | < th | dose independent | rect. | 18 | 23 |
| 423 | 385.80 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 430 | 385.87 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 433 | 385.90 | wind | 3 | 43200 | < th | dose independent | rect. | 14 | 23 |
| 444 | 386.02 | wind | 3 | 43200 | < th | dose dependent | sin | 10 | NA |
| 451 | 386.06 | wind | 3 | 43200 | > th | dose independent | rect. | 15 | 17 |
| 469 | 386.29 | wind | 3 | 43200 | < th | dose dependent | rect. | 19 | 11 |
| 476 | 386.36 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 23 |
| 491 | 386.48 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 23 |
| 498 | 386.51 | wind | 3 | 43200 | > th | dose independent | rect. | 18 | 23 |
| 510 | 386.69 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 9 |
| 523 | 386.78 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 569 | 387.26 | humidity | 80 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 578 | 387.41 | wind | 3 | 43200 | < th | dose dependent | rect. | 7 | 7 |
| 606 | 387.74 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 646 | 388.26 | wind | 1 | 43200 | > th | dose dependent | rect. | 14 | 18 |
| 750 | 389.48 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 8 |
| 763 | 389.63 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 782 | 389.75 | wind | 3 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 792 | 389.84 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 794 | 389.85 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 888 | 390.96 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 20 |
| 953 | 391.74 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 985 | 392.10 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 1 |