Os07g0110900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0110900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.34 | 0.217 | 11.9 | -0.343 | 0.0358 | -0.427 | 0.239 | 0.584 | -0.35 | 11.2 | 24.1 | 807 | -- | -- |
| 21.77 | 0.217 | 11.9 | -0.263 | 0.0466 | -0.463 | 0.323 | -- | -0.33 | 11.5 | 23.9 | 858 | -- | -- |
| 21.53 | 0.216 | 11.9 | -0.353 | 0.0431 | -0.415 | -- | 0.714 | -0.353 | 8.82 | 24.09 | 795 | -- | -- |
| 22.15 | 0.219 | 11.9 | -0.248 | 0.0413 | -0.554 | -- | -- | -0.322 | 9.31 | 22.63 | 851 | -- | -- |
| 21.62 | 0.217 | 11.9 | -0.361 | -- | -0.398 | -- | 0.751 | -0.355 | -- | 24.1 | 823 | -- | -- |
| 25.23 | 0.235 | 11.9 | -0.117 | 0.0206 | -- | -0.383 | -- | -0.239 | 23.9 | -- | -- | -- | -- |
| 25.85 | 0.238 | 11.9 | -0.103 | 0.0261 | -- | -- | -- | -0.237 | 2.08 | -- | -- | -- | -- |
| 22.26 | 0.22 | 11.9 | -0.247 | -- | -0.548 | -- | -- | -0.318 | -- | 22.56 | 857 | -- | -- |
| 23.57 | 0.226 | 11.9 | -- | 0.035 | -0.418 | -- | -- | -0.282 | 8.91 | 23.17 | 797 | -- | -- |
| 25.89 | 0.238 | 11.9 | -0.102 | -- | -- | -- | -- | -0.237 | -- | -- | -- | -- | -- |
| 26.13 | 0.239 | 11.9 | -- | 0.0242 | -- | -- | -- | -0.226 | 1.99 | -- | -- | -- | -- |
| 23.63 | 0.226 | 11.9 | -- | -- | -0.409 | -- | -- | -0.279 | -- | 23.1 | 840 | -- | -- |
| 26.17 | 0.239 | 11.9 | -- | -- | -- | -- | -- | -0.225 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.57 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 3 | 19.80 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 10 | 20.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 18 | 20.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 21 | 20.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 36 | 20.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 41 | 20.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 45 | 20.55 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 60 | 20.61 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 17 |
| 80 | 20.66 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 116 | 20.74 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 161 | 20.83 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 170 | 20.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 288 | 21.06 | temperature | 10 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 332 | 21.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 348 | 21.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 363 | 21.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 20 |
| 366 | 21.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 392 | 21.23 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 429 | 21.27 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 12 |
| 543 | 21.40 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 15 |
| 638 | 21.50 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 652 | 21.51 | radiation | 30 | 10 | < th | dose dependent | rect. | 6 | 5 |
| 658 | 21.52 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 7 |
| 670 | 21.52 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 684 | 21.54 | temperature | 20 | 720 | < th | dose independent | sin | 5 | NA |
| 686 | 21.54 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 10 |
| 688 | 21.54 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 16 |
| 699 | 21.55 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 18 |
| 700 | 21.55 | radiation | 1 | 30 | > th | dose independent | rect. | 12 | 23 |
| 723 | 21.57 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 818 | 21.63 | radiation | 20 | 90 | < th | dose independent | rect. | 5 | 5 |
| 823 | 21.63 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 20 |
| 839 | 21.64 | radiation | 20 | 10 | < th | dose independent | rect. | 6 | 4 |
| 864 | 21.65 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 4 |
| 880 | 21.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 918 | 21.67 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 924 | 21.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |