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Os07g0110400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0123) R2 : 0.0307
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0981 (0.0258) R2dN8 : 0.0396 R2N8 : 0.0307
σ : 0.231
deviance : 24.46
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.43 0.196 11.5 0.202 0.188 0.213 0.124 -0.253 0.226 3.12 24.6 307 -- --
17.63 0.196 11.5 0.141 0.196 0.206 0.0125 -- 0.199 3.2 24.52 315 -- --
17.47 0.195 11.5 0.186 0.187 0.215 -- -0.208 0.222 2.97 24.56 306 -- --
17.61 0.195 11.5 0.12 0.189 0.204 -- -- 0.198 3.02 24.5 306 -- --
18.91 0.203 11.5 0.203 -- 0.262 -- -0.193 0.255 -- 24.5 217 -- --
19.76 0.208 11.5 0.0521 0.287 -- 0.11 -- 0.098 3.87 -- -- -- --
19.8 0.208 11.5 0.0506 0.288 -- -- -- 0.0973 3.83 -- -- -- --
19.12 0.204 11.5 0.147 -- 0.264 -- -- 0.228 -- 24.9 251 -- --
17.96 0.197 11.5 -- 0.2 0.185 -- -- 0.177 3.14 24.6 305 -- --
24.36 0.231 11.5 0.0625 -- -- -- -- 0.105 -- -- -- -- --
19.86 0.208 11.5 -- 0.289 -- -- -- 0.0917 3.83 -- -- -- --
19.59 0.206 11.5 -- -- 0.252 -- -- 0.21 -- 24.96 248 -- --
24.46 0.231 11.5 -- -- -- -- -- 0.0981 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.77 temperature 15 30 > th dose dependent rect. 6 23
2 16.78 temperature 15 30 > th dose dependent rect. 19 23
10 17.05 humidity 80 43200 < th dose independent rect. 17 2
12 17.10 humidity 80 43200 > th dose independent rect. 18 1
16 17.12 wind 9 14400 > th dose dependent sin 6 NA
18 17.14 wind 9 14400 > th dose independent sin 6 NA
21 17.15 temperature 30 270 < th dose dependent rect. 11 22
31 17.24 wind 9 14400 < th dose independent sin 6 NA
32 17.25 temperature 15 270 > th dose dependent rect. 17 22
34 17.26 atmosphere 1005 43200 < th dose independent rect. 11 1
43 17.30 temperature 20 30 > th dose dependent rect. 11 23
46 17.32 humidity 80 43200 > th dose dependent rect. 19 1
47 17.32 humidity 80 43200 < th dose dependent rect. 7 1
50 17.33 atmosphere 1005 43200 > th dose independent rect. 11 1
52 17.33 temperature 20 270 > th dose dependent sin 9 NA
58 17.35 atmosphere 1005 43200 > th dose independent rect. 7 1
59 17.35 atmosphere 1005 43200 < th dose independent rect. 7 1
63 17.35 atmosphere 1015 14400 < th dose independent rect. 19 3
66 17.35 wind 9 14400 > th dose dependent rect. 22 17
72 17.36 atmosphere 1015 14400 > th dose independent rect. 19 4
73 17.36 atmosphere 1005 43200 < th dose independent rect. 7 5
75 17.36 wind 9 14400 < th dose independent rect. 4 8
76 17.36 wind 9 14400 > th dose independent rect. 3 9
82 17.37 atmosphere 1015 14400 > th dose independent rect. 20 1
87 17.37 atmosphere 995 43200 < th dose independent rect. 16 6
89 17.37 atmosphere 1015 14400 > th dose independent rect. 18 7
96 17.37 wind 9 14400 > th dose independent rect. 23 14
98 17.37 atmosphere 995 43200 < th dose dependent rect. 16 6
102 17.38 atmosphere 1015 14400 > th dose independent sin 14 NA
103 17.38 atmosphere 1015 14400 < th dose independent sin 13 NA
105 17.38 atmosphere 1015 14400 < th dose independent rect. 20 1
133 17.38 wind 9 14400 > th dose independent rect. 22 17
135 17.38 temperature 25 270 < th dose independent rect. 13 20
141 17.39 atmosphere 1015 14400 > th dose independent no NA NA
143 17.39 atmosphere 1015 14400 < th dose independent no NA NA
151 17.39 atmosphere 1005 43200 > th dose independent rect. 6 6
152 17.39 atmosphere 995 43200 > th dose independent rect. 16 6
192 17.39 atmosphere 1015 14400 < th dose independent rect. 4 20
216 17.39 atmosphere 1015 14400 < th dose independent rect. 18 21
220 17.39 atmosphere 1015 14400 > th dose independent rect. 2 22
232 17.39 atmosphere 1015 14400 > th dose independent rect. 16 22
238 17.39 atmosphere 1015 14400 < th dose independent rect. 1 22
300 17.39 atmosphere 1015 14400 < th dose independent rect. 23 23
303 17.39 atmosphere 995 30 > th dose dependent rect. 5 14
313 17.40 atmosphere 1015 14400 < th dose independent rect. 10 3
359 17.40 atmosphere 1015 14400 < th dose independent rect. 22 19
360 17.40 atmosphere 1015 14400 > th dose independent rect. 4 20
371 17.40 atmosphere 1015 14400 > th dose independent rect. 19 20
423 17.40 atmosphere 1015 14400 > th dose dependent rect. 21 10
425 17.40 atmosphere 1015 14400 > th dose dependent rect. 20 13
433 17.41 atmosphere 1015 14400 > th dose independent sin 2 NA
434 17.41 atmosphere 1015 14400 < th dose independent sin 2 NA
436 17.41 atmosphere 1015 14400 > th dose independent rect. 10 3
443 17.41 atmosphere 1015 14400 > th dose independent rect. 8 6
445 17.41 atmosphere 1015 14400 < th dose independent rect. 8 6
488 17.41 wind 9 14400 < th dose independent rect. 22 17
490 17.41 atmosphere 1015 14400 < th dose independent rect. 23 17
495 17.41 atmosphere 1015 14400 > th dose independent rect. 22 18
543 17.41 atmosphere 1015 14400 > th dose dependent sin 8 NA
545 17.41 atmosphere 1015 14400 > th dose dependent sin 3 NA
547 17.41 atmosphere 1015 14400 > th dose dependent rect. 8 4
548 17.41 atmosphere 1015 14400 > th dose dependent rect. 7 6
549 17.41 atmosphere 1015 14400 > th dose dependent rect. 23 6
552 17.41 atmosphere 1015 14400 > th dose dependent rect. 22 8
555 17.41 atmosphere 1015 14400 > th dose dependent rect. 4 11
559 17.41 atmosphere 1015 14400 > th dose dependent rect. 1 14
668 17.42 wind 9 14400 > th dose independent rect. 23 21
677 17.42 atmosphere 1010 43200 < th dose dependent rect. 7 1
678 17.42 atmosphere 1015 14400 > th dose dependent rect. 9 2
713 17.43 atmosphere 1015 14400 > th dose independent rect. 11 1
758 17.43 wind 9 14400 > th dose independent rect. 3 17
781 17.43 atmosphere 1015 14400 > th dose dependent rect. 2 1
787 17.43 atmosphere 1015 14400 > th dose dependent rect. 24 4
791 17.43 atmosphere 1010 43200 < th dose dependent rect. 7 7
818 17.44 humidity 80 43200 < th dose independent rect. 7 1
869 17.44 atmosphere 1010 14400 > th dose dependent rect. 17 1
870 17.44 atmosphere 1010 43200 < th dose dependent rect. 12 1
875 17.44 atmosphere 1010 43200 < th dose dependent rect. 10 4
878 17.44 atmosphere 1010 43200 < th dose dependent rect. 8 5
943 17.45 temperature 25 1440 > th dose independent rect. 16 13
968 17.45 atmosphere 1010 43200 < th dose dependent rect. 14 1