Os07g0110200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NOG, C-terminal domain containing protein.
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Os07g0110200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NOG, C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.99 | 0.415 | 12 | 0.812 | 0.584 | 0.885 | 0.772 | 0.273 | 0.3 | 18 | 20.5 | 1594 | -- | -- |
| 78.14 | 0.412 | 12 | 0.788 | 0.588 | 0.836 | 0.758 | -- | 0.295 | 18 | 20.6 | 1590 | -- | -- |
| 79.43 | 0.415 | 12 | 0.801 | 0.59 | 0.898 | -- | 0.271 | 0.301 | 17.9 | 20.54 | 1590 | -- | -- |
| 79.57 | 0.415 | 12 | 0.749 | 0.59 | 0.864 | -- | -- | 0.289 | 18 | 20.53 | 1590 | -- | -- |
| 97.26 | 0.459 | 12 | 0.785 | -- | 0.895 | -- | 0.326 | 0.288 | -- | 20.6 | 1755 | -- | -- |
| 93.66 | 0.454 | 12 | 1.12 | 0.578 | -- | 0.906 | -- | 0.482 | 18.1 | -- | -- | -- | -- |
| 95.67 | 0.458 | 11.9 | 1.11 | 0.583 | -- | -- | -- | 0.485 | 18 | -- | -- | -- | -- |
| 97.44 | 0.46 | 12 | 0.72 | -- | 0.854 | -- | -- | 0.274 | -- | 20.5 | 1763 | -- | -- |
| 89.37 | 0.44 | 12 | -- | 0.636 | 1.19 | -- | -- | 0.149 | 17.7 | 19.8 | 4120 | -- | -- |
| 113.28 | 0.497 | 11.9 | 1.09 | -- | -- | -- | -- | 0.472 | -- | -- | -- | -- | -- |
| 128.15 | 0.53 | 12 | -- | 0.567 | -- | -- | -- | 0.362 | 18.1 | -- | -- | -- | -- |
| 105.92 | 0.479 | 12 | -- | -- | 1.14 | -- | -- | 0.133 | -- | 18.4 | 15067 | -- | -- |
| 144.79 | 0.562 | 12 | -- | -- | -- | -- | -- | 0.351 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.11 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 7 | 76.11 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 11 | 76.57 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 18 |
| 30 | 77.21 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 52 | 77.64 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 58 | 77.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 61 | 77.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 14 | 17 |
| 75 | 77.88 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 8 |
| 78 | 77.89 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 6 |
| 89 | 77.93 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 94 | 77.96 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 111 | 78.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 14 | 17 |
| 155 | 78.20 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 170 | 78.26 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 174 | 78.26 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 9 |
| 253 | 78.49 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 16 |
| 288 | 78.58 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 308 | 78.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 371 | 78.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 21 |
| 401 | 78.86 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 426 | 78.90 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 21 |
| 430 | 78.91 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 459 | 78.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 503 | 79.05 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 525 | 79.08 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 21 |
| 527 | 79.09 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 578 | 79.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 596 | 79.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 601 | 79.21 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 606 | 79.22 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 21 |
| 672 | 79.36 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 721 | 79.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 740 | 79.48 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 744 | 79.49 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 20 |
| 752 | 79.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 777 | 79.56 | temperature | 20 | 4320 | < th | dose independent | sin | 18 | NA |
| 811 | 79.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 884 | 79.80 | temperature | 20 | 90 | > th | dose independent | rect. | 8 | 20 |
| 897 | 79.83 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 940 | 79.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 943 | 79.97 | temperature | 15 | 90 | > th | dose dependent | sin | 5 | NA |