Os07g0108500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : C2 calcium/lipid-binding region, CaLB domain containing protein.
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Os07g0108500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : C2 calcium/lipid-binding region, CaLB domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 336.5 | 0.854 | 2.99 | 0.354 | 0.14 | 1.49 | 0.772 | -9.44 | -0.00803 | 17.4 | 30 | 10 | 8 | 1 |
| 344.95 | 0.865 | 3 | 0.448 | 0.201 | 3.22 | 1.34 | -- | -0.00679 | 17.7 | 33.12 | 10 | 7.92 | 0.995 |
| 337.95 | 0.863 | 2.99 | 0.352 | 0.147 | 1.5 | -- | -9.74 | -0.00402 | 17.8 | 30 | 10 | 8 | 1 |
| 335.66 | 0.853 | 2.99 | 0.44 | 0.149 | 5.79 | -- | -- | -0.00373 | 17.8 | 33.03 | 2 | 7.91 | 0.645 |
| 339.06 | 0.862 | 2.98 | 0.347 | -- | 1.44 | -- | -9.73 | -0.00826 | -- | 30 | 10 | 8 | 1 |
| 373 | 0.905 | 3 | 0.33 | 0.0733 | -- | 1.22 | -- | -0.0468 | 17.7 | -- | -- | -- | -- |
| 376.6 | 0.909 | 3 | 0.324 | 0.0865 | -- | -- | -- | -0.0415 | 16.2 | -- | -- | -- | -- |
| 336.8 | 0.855 | 2.99 | 0.433 | -- | 5.71 | -- | -- | -0.0073 | -- | 33.1 | 2 | 7.91 | 0.726 |
| 340.39 | 0.864 | 3 | -- | 0.144 | 4.45 | -- | -- | -0.0515 | 18 | 33.17 | 3 | 7.91 | 1.28 |
| 377.01 | 0.907 | 3 | 0.32 | -- | -- | -- | -- | -0.0438 | -- | -- | -- | -- | -- |
| 379.36 | 0.911 | 3.01 | -- | 0.0804 | -- | -- | -- | -0.0775 | 16.3 | -- | -- | -- | -- |
| 341.46 | 0.863 | 3 | -- | -- | 4.39 | -- | -- | -0.0547 | -- | 33.17 | 3 | 7.91 | 1.28 |
| 379.71 | 0.91 | 3.01 | -- | -- | -- | -- | -- | -0.0793 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 336.50 | radiation | 30 | 10 | > th | dose independent | rect. | 8 | 1 |
| 3 | 339.90 | radiation | 20 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 23 | 345.82 | humidity | 70 | 10 | < th | dose dependent | rect. | 17 | 15 |
| 43 | 346.09 | humidity | 70 | 10 | < th | dose independent | rect. | 17 | 16 |
| 77 | 346.58 | humidity | 80 | 30 | < th | dose dependent | rect. | 3 | 5 |
| 79 | 346.64 | humidity | 80 | 90 | < th | dose independent | rect. | 3 | 5 |
| 80 | 346.65 | humidity | 80 | 30 | < th | dose dependent | rect. | 5 | 3 |
| 82 | 346.70 | humidity | 80 | 90 | < th | dose independent | rect. | 5 | 3 |
| 84 | 346.72 | humidity | 80 | 30 | < th | dose dependent | rect. | 7 | 1 |
| 93 | 346.97 | humidity | 80 | 30 | < th | dose dependent | rect. | 23 | 9 |
| 97 | 347.05 | humidity | 70 | 10 | < th | dose dependent | rect. | 19 | 13 |
| 117 | 347.11 | humidity | 70 | 90 | < th | dose dependent | rect. | 19 | 12 |
| 162 | 347.14 | humidity | 70 | 10 | < th | dose independent | rect. | 19 | 13 |
| 253 | 347.31 | humidity | 70 | 10 | < th | dose independent | rect. | 7 | 1 |
| 549 | 350.20 | wind | 3 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 626 | 351.83 | wind | 7 | 270 | > th | dose independent | rect. | 17 | 1 |
| 627 | 351.83 | wind | 5 | 90 | > th | dose dependent | rect. | 17 | 4 |
| 645 | 352.19 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 12 | 8 |
| 649 | 352.40 | wind | 3 | 90 | > th | dose independent | rect. | 4 | 1 |
| 670 | 352.80 | wind | 7 | 10 | > th | dose independent | rect. | 19 | 3 |
| 675 | 352.80 | wind | 7 | 10 | > th | dose dependent | rect. | 19 | 3 |
| 681 | 352.86 | wind | 7 | 10 | > th | dose independent | rect. | 19 | 1 |
| 683 | 352.86 | wind | 7 | 10 | > th | dose dependent | rect. | 19 | 1 |
| 693 | 352.95 | temperature | 20 | 90 | < th | dose independent | rect. | 18 | 1 |
| 700 | 352.95 | temperature | 20 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 749 | 353.55 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 829 | 354.39 | wind | 1 | 90 | < th | dose independent | rect. | 6 | 1 |
| 838 | 354.52 | humidity | 70 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 839 | 354.57 | temperature | 25 | 30 | > th | dose dependent | rect. | 17 | 1 |
| 879 | 355.31 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 5 | 1 |
| 886 | 355.31 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 905 | 355.46 | wind | 1 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 907 | 355.65 | humidity | 70 | 10 | > th | dose independent | sin | 10 | NA |
| 913 | 355.74 | temperature | 25 | 10 | < th | dose independent | rect. | 13 | 1 |
| 947 | 356.12 | temperature | 25 | 90 | < th | dose dependent | rect. | 12 | 2 |
| 952 | 356.18 | humidity | 70 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 993 | 356.36 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 2 |
| 1000 | 356.47 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 1 |