Os07g0108300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Alanine aminotransferase.
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Os07g0108300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Alanine aminotransferase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.5 | 0.197 | 15.6 | 0.864 | 0.919 | -0.812 | -0.06 | 5.59 | 0.00536 | 23.7 | 30.32 | 1215 | -- | -- |
| 18.8 | 0.202 | 15.7 | -0.0605 | 0.912 | -0.193 | -0.0145 | -- | 0.00451 | 23.7 | 33.7 | 1778 | -- | -- |
| 17.52 | 0.195 | 15.6 | 0.862 | 0.919 | -0.812 | -- | 5.57 | 0.00542 | 23.7 | 30.32 | 1210 | -- | -- |
| 18.8 | 0.202 | 15.7 | -0.0671 | 0.907 | -0.19 | -- | -- | 0.0116 | 23.7 | 33.61 | 1755 | -- | -- |
| 66.49 | 0.382 | 15.7 | 0.0975 | -- | -1.2 | -- | 5.08 | 0.0267 | -- | 30.3 | 1707 | -- | -- |
| 20.38 | 0.212 | 15.7 | -0.116 | 0.889 | -- | -0.0863 | -- | 0.04 | 23.7 | -- | -- | -- | -- |
| 20.42 | 0.212 | 15.7 | -0.112 | 0.889 | -- | -- | -- | 0.0404 | 23.7 | -- | -- | -- | -- |
| 59.14 | 0.36 | 15.7 | -0.0023 | -- | -0.772 | -- | -- | 0.0529 | -- | 27.05 | 6004 | -- | -- |
| 18.79 | 0.202 | 15.7 | -- | 0.92 | -0.214 | -- | -- | 0.0139 | 23.7 | 31.78 | 999 | -- | -- |
| 70.11 | 0.391 | 15.7 | -0.0871 | -- | -- | -- | -- | 0.051 | -- | -- | -- | -- | -- |
| 20.75 | 0.213 | 15.7 | -- | 0.888 | -- | -- | -- | 0.0529 | 23.7 | -- | -- | -- | -- |
| 58.03 | 0.356 | 15.7 | -- | -- | -0.771 | -- | -- | 0.0629 | -- | 26.51 | 1634 | -- | -- |
| 70.31 | 0.391 | 15.7 | -- | -- | -- | -- | -- | 0.0607 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.23 | radiation | 1.0 | 270 | < th | dose independent | rect. | 5 | 21 |
| 2 | 16.34 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 3 | 16.36 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 10 |
| 10 | 16.57 | radiation | 1.0 | 270 | > th | dose independent | rect. | 9 | 22 |
| 11 | 16.59 | temperature | 30.0 | 270 | < th | dose independent | rect. | 15 | 10 |
| 14 | 16.61 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 14 | 13 |
| 16 | 16.61 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 13 | 18 |
| 18 | 16.62 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 21 | 16.64 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 26 | 16.65 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 15 | 16 |
| 28 | 16.68 | radiation | 1.0 | 90 | < th | dose independent | rect. | 14 | 13 |
| 30 | 16.68 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 20 |
| 31 | 16.69 | radiation | 1.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 40 | 16.71 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 43 | 16.72 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 45 | 16.73 | temperature | 30.0 | 90 | < th | dose independent | rect. | 7 | 20 |
| 57 | 16.75 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 11 | 7 |
| 61 | 16.76 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 11 | 9 |
| 62 | 16.76 | wind | 9.0 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 69 | 16.78 | radiation | 1.0 | 270 | > th | dose independent | sin | 18 | NA |
| 77 | 16.79 | humidity | 50.0 | 90 | > th | dose independent | rect. | 7 | 20 |
| 85 | 16.81 | radiation | 1.0 | 270 | > th | dose independent | rect. | 11 | 19 |
| 106 | 16.86 | radiation | 1.0 | 270 | > th | dose independent | rect. | 11 | 8 |
| 121 | 16.87 | radiation | 10.0 | 270 | < th | dose dependent | sin | 16 | NA |
| 125 | 16.88 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 132 | 16.90 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 133 | 16.90 | humidity | 90.0 | 270 | < th | dose independent | rect. | 11 | 7 |
| 140 | 16.91 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 150 | 16.93 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 156 | 16.94 | radiation | 1.0 | 90 | > th | dose independent | sin | 14 | NA |
| 178 | 16.96 | temperature | 20.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 183 | 16.97 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 3 | 4 |
| 193 | 16.98 | radiation | 1.0 | 270 | < th | dose independent | sin | 16 | NA |
| 194 | 16.98 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 197 | 16.98 | wind | 7.0 | 270 | < th | dose independent | rect. | 13 | 16 |
| 213 | 16.99 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 15 |
| 229 | 17.00 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 231 | 17.00 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 12 | 6 |
| 246 | 17.02 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 247 | 17.02 | temperature | 25.0 | 270 | > th | dose independent | rect. | 12 | 6 |
| 264 | 17.04 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 6 |
| 270 | 17.04 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 271 | 17.05 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 274 | 17.05 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 291 | 17.07 | radiation | 1.0 | 90 | < th | dose independent | sin | 14 | NA |
| 292 | 17.07 | wind | 1.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 315 | 17.09 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 333 | 17.10 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 15 | 16 |
| 334 | 17.10 | radiation | 1.0 | 90 | > th | dose independent | rect. | 15 | 16 |
| 353 | 17.11 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 1 | 6 |
| 356 | 17.11 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 362 | 17.12 | wind | 7.0 | 90 | < th | dose independent | rect. | 15 | 16 |
| 397 | 17.15 | wind | 1.0 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 401 | 17.15 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 3 | 4 |
| 410 | 17.16 | wind | 1.0 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 426 | 17.16 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 427 | 17.17 | wind | 1.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 428 | 17.17 | wind | 9.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 444 | 17.18 | radiation | 1.0 | 270 | < th | dose dependent | sin | 19 | NA |
| 457 | 17.19 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 473 | 17.20 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 484 | 17.20 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 496 | 17.21 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 526 | 17.23 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 538 | 17.24 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 570 | 17.26 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 15 | 16 |
| 580 | 17.26 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 611 | 17.28 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 15 |
| 615 | 17.28 | wind | 1.0 | 90 | > th | dose independent | rect. | 7 | 20 |
| 616 | 17.28 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 22 |
| 631 | 17.28 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 640 | 17.29 | wind | 5.0 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 649 | 17.29 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 10 | 7 |
| 667 | 17.30 | wind | 9.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 671 | 17.30 | wind | 5.0 | 270 | < th | dose independent | rect. | 12 | 6 |
| 698 | 17.31 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 716 | 17.31 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 16 |
| 723 | 17.31 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 3 | 4 |
| 728 | 17.31 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 16 |
| 737 | 17.32 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 738 | 17.32 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 768 | 17.33 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 785 | 17.34 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 787 | 17.34 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 805 | 17.34 | wind | 7.0 | 10 | < th | dose independent | rect. | 15 | 16 |
| 827 | 17.35 | humidity | 50.0 | 1440 | < th | dose independent | sin | 12 | NA |
| 828 | 17.35 | wind | 5.0 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 872 | 17.36 | wind | 5.0 | 43200 | > th | dose independent | rect. | 11 | 6 |
| 896 | 17.37 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 7 |
| 898 | 17.37 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 15 | 14 |
| 906 | 17.37 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 7 |
| 908 | 17.37 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 22 | 9 |
| 910 | 17.37 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 5 | 11 |
| 921 | 17.38 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 924 | 17.38 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 930 | 17.38 | wind | 5.0 | 43200 | < th | dose independent | rect. | 11 | 6 |
| 940 | 17.38 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 15 | 12 |
| 958 | 17.38 | wind | 9.0 | 14400 | < th | dose independent | rect. | 18 | 21 |
| 959 | 17.38 | radiation | 30.0 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 966 | 17.38 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 15 | 5 |
| 990 | 17.39 | wind | 1.0 | 90 | > th | dose independent | rect. | 7 | 8 |