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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0108200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Multi antimicrobial extrusion protein MatE family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.21 (0.026) R2 : 0.599
β1 : 2.49 (0.102) R2dD : 0.734 R2D : 0.177
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.56 (0.0927) R2dE : 0.435 R2E : -0.272
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.801 (0.065) R2dN8 : 0.284 R2N8 : -0.226
σ : 0.458
deviance : 96.84
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.64
memory length : 28924
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
101.31 0.473 3.36 1.3 0.26 2.11 0.782 4.12 0.392 22.1 0.8909 10023 -- --
115.47 0.5 3.31 2.21 0.195 1.62 1.25 -- 0.638 22.5 1.96 14318 -- --
102.82 0.472 3.36 1.27 0.129 2.13 -- 4.18 0.386 22.3 0.8987 10120 -- --
98.39 0.462 3.28 2.33 0.124 1.47 -- -- 0.696 22.4 1.66 28748 -- --
103.35 0.473 3.36 1.28 -- 2.17 -- 4.21 0.381 -- 0.8902 10181 -- --
159.49 0.592 3.36 1.75 0.162 -- 0.695 -- 0.171 20.6 -- -- -- --
161.06 0.594 3.36 1.73 0.16 -- -- -- 0.171 20.7 -- -- -- --
96.84 0.458 3.21 2.49 -- 1.56 -- -- 0.801 -- 1.64 28924 -- --
196.13 0.652 3.33 -- 0.291 1.4 -- -- 0.319 21.7 7.8 29558 -- --
162.51 0.596 3.35 1.73 -- -- -- -- 0.169 -- -- -- -- --
239.79 0.724 3.4 -- 0.159 -- -- -- -0.0219 21.5 -- -- -- --
194.73 0.65 3.34 -- -- 1.3 -- -- 0.186 -- 8.49 28833 -- --
241.27 0.725 3.4 -- -- -- -- -- -0.0224 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 87.74 radiation 1.0 43200 < th dose independent rect. 17 13
3 87.85 radiation 1.0 43200 < th dose independent rect. 17 1
6 88.15 radiation 1.0 43200 > th dose independent rect. 16 14
7 88.17 radiation 1.0 43200 > th dose independent rect. 17 1
10 88.39 atmosphere 1010.0 14400 > th dose independent rect. 15 1
16 88.74 humidity 80.0 43200 < th dose independent rect. 16 3
18 88.79 humidity 80.0 43200 > th dose independent rect. 18 1
19 88.83 humidity 80.0 43200 < th dose independent rect. 18 1
24 88.89 humidity 80.0 43200 > th dose independent rect. 16 4
29 88.94 radiation 1.0 43200 > th dose dependent rect. 17 12
33 88.95 radiation 1.0 43200 < th dose independent rect. 16 7
41 89.02 radiation 1.0 43200 < th dose independent sin 13 NA
42 89.04 radiation 1.0 43200 > th dose dependent rect. 17 2
67 89.12 precipitation 0.1 43200 < th dose independent rect. 23 1
68 89.12 precipitation 0.1 43200 < th dose dependent rect. 23 1
89 89.36 radiation 20.0 43200 < th dose dependent rect. 17 12
108 89.45 precipitation 0.1 43200 > th dose independent rect. 23 1
109 89.45 humidity 90.0 43200 < th dose independent rect. 5 2
110 89.45 precipitation 0.1 43200 > th dose dependent rect. 23 1
111 89.48 radiation 1.0 43200 > th dose independent sin 12 NA
114 89.49 atmosphere 1010.0 43200 > th dose dependent rect. 16 1
136 89.63 humidity 90.0 43200 > th dose independent rect. 6 1
141 89.66 radiation 1.0 43200 < th dose independent rect. 10 20
153 89.68 radiation 40.0 43200 < th dose dependent rect. 17 2
167 89.72 radiation 20.0 43200 < th dose dependent rect. 17 6
171 89.73 radiation 10.0 43200 < th dose dependent rect. 16 14
229 89.93 humidity 80.0 43200 > th dose dependent rect. 19 2
281 90.09 atmosphere 1015.0 43200 < th dose independent rect. 6 17
282 90.10 atmosphere 1015.0 43200 < th dose independent rect. 11 3
283 90.11 atmosphere 1015.0 43200 > th dose independent rect. 11 3
305 90.14 radiation 1.0 43200 > th dose independent rect. 10 20
316 90.18 radiation 1.0 43200 < th dose independent rect. 2 4
317 90.18 radiation 1.0 43200 < th dose independent rect. 24 6
322 90.19 radiation 1.0 43200 < th dose independent rect. 22 8
350 90.27 radiation 1.0 43200 > th dose independent rect. 4 2
363 90.28 atmosphere 1015.0 43200 < th dose independent rect. 19 20
413 90.38 atmosphere 1015.0 43200 < th dose independent rect. 7 8
430 90.40 atmosphere 1015.0 43200 < th dose independent rect. 11 22
476 90.46 atmosphere 1015.0 43200 < th dose independent sin 21 NA
478 90.46 atmosphere 1015.0 43200 < th dose independent no NA NA
515 90.50 atmosphere 1015.0 43200 < th dose independent rect. 19 2
549 90.55 atmosphere 1015.0 43200 > th dose dependent rect. 9 3
587 90.64 atmosphere 1015.0 43200 > th dose independent rect. 6 17
605 90.66 atmosphere 1015.0 43200 > th dose dependent rect. 6 8
612 90.67 atmosphere 1015.0 43200 > th dose independent rect. 19 19
613 90.67 humidity 90.0 43200 > th dose dependent rect. 6 1
617 90.68 atmosphere 1015.0 43200 > th dose independent rect. 6 8
623 90.69 atmosphere 1015.0 43200 < th dose independent rect. 19 14
710 90.77 atmosphere 1015.0 43200 < th dose independent rect. 19 9
757 90.81 atmosphere 1015.0 43200 > th dose independent rect. 21 1
773 90.82 radiation 10.0 43200 < th dose dependent rect. 13 17
824 90.86 atmosphere 1015.0 43200 > th dose independent rect. 11 22
898 90.91 atmosphere 1015.0 43200 > th dose independent no NA NA
922 90.93 atmosphere 1015.0 43200 < th dose independent rect. 13 1