Os07g0108000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0108000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.12 | 0.245 | 9.53 | -0.335 | 0.236 | -0.525 | -0.239 | 1.19 | 0.0992 | 22.5 | 24.4 | 1278 | -- | -- |
| 28.07 | 0.247 | 9.57 | -0.583 | 0.206 | -0.396 | -0.226 | -- | 0.0158 | 22.1 | 23.53 | 5516 | -- | -- |
| 27.34 | 0.244 | 9.53 | -0.332 | 0.237 | -0.525 | -- | 1.16 | 0.0999 | 22.4 | 24.4 | 1278 | -- | -- |
| 27.87 | 0.246 | 9.58 | -0.644 | 0.223 | -0.385 | -- | -- | -0.0174 | 22.2 | 26.68 | 5508 | -- | -- |
| 30.27 | 0.256 | 9.53 | -0.342 | -- | -0.467 | -- | 1.03 | 0.0978 | -- | 24.31 | 1418 | -- | -- |
| 33.48 | 0.271 | 9.58 | -0.782 | 0.196 | -- | -0.217 | -- | -0.0427 | 21.5 | -- | -- | -- | -- |
| 33.65 | 0.272 | 9.58 | -0.773 | 0.198 | -- | -- | -- | -0.0421 | 21.3 | -- | -- | -- | -- |
| 30.45 | 0.257 | 9.57 | -0.641 | -- | -0.363 | -- | -- | -0.0195 | -- | 26.5 | 5702 | -- | -- |
| 30.66 | 0.258 | 9.52 | -- | 0.207 | -0.697 | -- | -- | 0.252 | 21.6 | 8.803 | 47520 | -- | -- |
| 35.95 | 0.28 | 9.58 | -0.772 | -- | -- | -- | -- | -0.0429 | -- | -- | -- | -- | -- |
| 49.4 | 0.329 | 9.56 | -- | 0.199 | -- | -- | -- | 0.044 | 21 | -- | -- | -- | -- |
| 33.19 | 0.268 | 9.51 | -- | -- | -0.691 | -- | -- | 0.25 | -- | 8.337 | 47520 | -- | -- |
| 51.67 | 0.336 | 9.56 | -- | -- | -- | -- | -- | 0.0427 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.84 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 24 | 9 |
| 13 | 24.61 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 40 | 25.46 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 20 |
| 90 | 26.16 | radiation | 1.0 | 270 | > th | dose independent | rect. | 11 | 20 |
| 93 | 26.18 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 15 | 18 |
| 94 | 26.18 | radiation | 1.0 | 270 | > th | dose independent | rect. | 10 | 22 |
| 95 | 26.18 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 15 | 18 |
| 112 | 26.40 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 115 | 26.40 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 16 | 18 |
| 119 | 26.41 | temperature | 10.0 | 30 | > th | dose independent | rect. | 9 | 6 |
| 121 | 26.41 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 9 | 6 |
| 122 | 26.41 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 9 | 6 |
| 123 | 26.41 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 6 |
| 124 | 26.41 | temperature | 10.0 | 30 | > th | dose independent | rect. | 15 | 18 |
| 125 | 26.41 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 6 |
| 136 | 26.44 | radiation | 1.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 138 | 26.44 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 20 |
| 155 | 26.49 | radiation | 40.0 | 30 | < th | dose independent | rect. | 15 | 18 |
| 161 | 26.52 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 162 | 26.53 | wind | 9.0 | 30 | < th | dose independent | rect. | 9 | 6 |
| 164 | 26.54 | wind | 9.0 | 30 | < th | dose independent | rect. | 15 | 18 |
| 166 | 26.55 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 181 | 26.66 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 184 | 26.67 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 9 | 6 |
| 186 | 26.69 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 23 |
| 188 | 26.69 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 193 | 26.71 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 18 |
| 201 | 26.76 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 15 |
| 217 | 26.80 | wind | 1.0 | 30 | > th | dose independent | rect. | 9 | 6 |
| 227 | 26.83 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 234 | 26.84 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 14 | NA |
| 293 | 26.95 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 12 | 8 |
| 309 | 26.98 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 18 |
| 312 | 26.98 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 314 | 26.99 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 15 | 18 |
| 324 | 27.01 | humidity | 70.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 328 | 27.02 | radiation | 1.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 331 | 27.02 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 18 | 13 |
| 335 | 27.03 | humidity | 90.0 | 10 | < th | dose independent | rect. | 9 | 6 |
| 352 | 27.07 | temperature | 25.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 353 | 27.07 | temperature | 25.0 | 720 | > th | dose independent | rect. | 19 | 14 |
| 354 | 27.07 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 15 | 18 |
| 377 | 27.11 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 424 | 27.19 | temperature | 25.0 | 30 | > th | dose independent | rect. | 1 | 8 |
| 466 | 27.26 | radiation | 1.0 | 90 | > th | dose independent | rect. | 15 | 18 |
| 473 | 27.27 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 480 | 27.29 | humidity | 50.0 | 270 | > th | dose independent | rect. | 8 | 15 |
| 488 | 27.31 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 489 | 27.31 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 490 | 27.31 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 491 | 27.31 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 492 | 27.31 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 1 |
| 496 | 27.31 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 23 |
| 498 | 27.31 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 520 | 27.34 | humidity | 50.0 | 30 | > th | dose independent | rect. | 9 | 6 |
| 521 | 27.34 | temperature | 25.0 | 30 | > th | dose independent | rect. | 15 | 18 |
| 523 | 27.34 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 12 | 7 |
| 547 | 27.37 | radiation | 1.0 | 270 | < th | dose dependent | sin | 15 | NA |
| 548 | 27.37 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 554 | 27.38 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 9 |
| 555 | 27.38 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 9 |
| 563 | 27.40 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 3 |
| 565 | 27.40 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 571 | 27.41 | wind | 9.0 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 577 | 27.42 | humidity | 50.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 590 | 27.44 | radiation | 1.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 599 | 27.45 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 6 |
| 605 | 27.46 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 607 | 27.46 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 6 |
| 608 | 27.46 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 14 |
| 609 | 27.46 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 16 |
| 611 | 27.46 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 18 |
| 616 | 27.46 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 626 | 27.47 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 11 |
| 645 | 27.48 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 9 |
| 648 | 27.48 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 655 | 27.48 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 658 | 27.48 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 659 | 27.49 | radiation | 1.0 | 270 | < th | dose independent | sin | 15 | NA |
| 670 | 27.49 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 6 | 21 |
| 675 | 27.49 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 677 | 27.50 | wind | 1.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 678 | 27.50 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 3 |
| 680 | 27.50 | radiation | 1.0 | 270 | < th | dose independent | rect. | 16 | 11 |
| 698 | 27.50 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 702 | 27.51 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 3 |
| 703 | 27.51 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 3 |
| 704 | 27.51 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 8 | 3 |
| 705 | 27.51 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 3 |
| 714 | 27.51 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 21 |
| 715 | 27.51 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 3 |
| 822 | 27.56 | radiation | 1.0 | 270 | > th | dose independent | rect. | 8 | 3 |
| 845 | 27.57 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 9 | 17 |
| 860 | 27.59 | humidity | 70.0 | 270 | > th | dose independent | rect. | 23 | 9 |
| 865 | 27.59 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 867 | 27.59 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 5 |
| 885 | 27.60 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 15 |
| 916 | 27.61 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 9 | 18 |
| 923 | 27.62 | wind | 7.0 | 270 | < th | dose independent | rect. | 23 | 9 |
| 934 | 27.62 | temperature | 30.0 | 270 | < th | dose independent | rect. | 8 | 16 |
| 937 | 27.62 | radiation | 1.0 | 270 | < th | dose independent | rect. | 10 | 17 |
| 971 | 27.63 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 15 | 18 |
| 1000 | 27.65 | humidity | 50.0 | 270 | > th | dose independent | rect. | 8 | 3 |