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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0105900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.57 (0.0425) R2 : 0.43
β1 : -1.86 (0.155) R2dD : 0.19 R2D : 0.0992
β2 : 1.39 (0.106) R2dC : 0.241 R2C : 0.149
β3 : 0.836 (0.141) R2dE : 0.0545 R2E : -0.106
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.859 (0.0947) R2dN8 : 0.154 R2N8 : 0.0205
σ : 0.786
deviance : 284.88
__
_____
C
peak time of C : 13
E
wheather : radiation
threshold : -4.192
memory length : 1272
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
277.43 0.783 4.6 -2.1 1.34 0.86 -0.622 -2.05 -0.954 13.1 -11.49 1334 -- --
284.37 0.785 4.57 -1.85 1.39 0.831 -0.345 -- -0.857 13 -6.147 1272 -- --
278.91 0.778 4.6 -2.11 1.31 0.843 -- -1.89 -0.954 13.2 -4.921 1360 -- --
284.88 0.786 4.57 -1.86 1.39 0.836 -- -- -0.859 13 -4.192 1272 -- --
333.92 0.851 4.61 -2.41 -- 1.46 -- -2.1 -1.06 -- -1.07e-06 1789 -- --
305.43 0.819 4.53 -1.73 1.2 -- -0.452 -- -0.676 13.3 -- -- -- --
306.26 0.82 4.54 -1.74 1.2 -- -- -- -0.678 13.3 -- -- -- --
338.91 0.857 4.61 -1.89 -- 1.52 -- -- -0.963 -- -3.352 1800 -- --
339.56 0.858 4.55 -- 1.19 1.18 -- -- -0.727 13.4 -102.3 30656 -- --
394.67 0.928 4.55 -1.79 -- -- -- -- -0.703 -- -- -- -- --
386.25 0.919 4.49 -- 1.23 -- -- -- -0.484 13.4 -- -- -- --
428.8 0.964 4.57 -- -- 1.22 -- -- -0.75 -- -98.92 30656 -- --
479.1 1.02 4.51 -- -- -- -- -- -0.505 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 269.40 precipitation 0.1 43200 > th dose independent rect. 21 2
2 269.65 precipitation 0.1 43200 < th dose independent rect. 21 2
3 269.65 precipitation 0.1 43200 < th dose dependent rect. 21 2
5 270.27 precipitation 0.1 43200 > th dose dependent rect. 22 1
34 272.93 humidity 90.0 43200 < th dose independent rect. 18 1
38 273.61 radiation 1.0 43200 < th dose independent rect. 18 3
45 273.66 radiation 1.0 43200 < th dose independent rect. 18 8
48 273.68 precipitation 0.1 43200 > th dose independent rect. 18 5
51 273.78 precipitation 0.1 43200 > th dose independent rect. 18 7
54 273.80 precipitation 0.1 43200 < th dose independent rect. 18 5
55 273.80 precipitation 0.1 43200 < th dose dependent rect. 18 5
56 273.84 precipitation 0.1 43200 < th dose independent rect. 18 7
57 273.84 precipitation 0.1 43200 < th dose dependent rect. 18 7
60 273.92 humidity 90.0 43200 > th dose dependent rect. 5 1
65 274.02 radiation 1.0 43200 < th dose dependent rect. 18 11
66 274.06 radiation 1.0 43200 < th dose dependent rect. 18 1
68 274.06 radiation 1.0 43200 < th dose dependent rect. 18 4
72 274.12 radiation 1.0 43200 > th dose independent rect. 18 1
83 274.23 wind 1.0 14400 < th dose dependent rect. 19 7
87 274.26 atmosphere 1010.0 14400 > th dose dependent rect. 9 1
88 274.26 atmosphere 1010.0 14400 > th dose dependent rect. 8 5
94 274.34 atmosphere 1010.0 14400 > th dose dependent rect. 11 2
121 274.53 temperature 20.0 1440 > th dose dependent rect. 6 1
123 274.55 humidity 90.0 43200 < th dose independent rect. 17 5
128 274.57 wind 1.0 14400 < th dose independent rect. 20 6
152 274.75 atmosphere 1010.0 14400 > th dose independent rect. 15 1
153 274.75 atmosphere 1010.0 14400 > th dose independent rect. 4 3
158 274.78 atmosphere 1010.0 14400 > th dose independent rect. 4 1
161 274.80 atmosphere 1010.0 14400 < th dose independent rect. 3 4
165 274.81 humidity 80.0 43200 < th dose independent rect. 15 3
173 274.84 atmosphere 1010.0 14400 < th dose independent rect. 4 1
178 274.85 atmosphere 1010.0 14400 > th dose dependent sin 1 NA
226 275.06 humidity 80.0 43200 > th dose independent rect. 16 2
245 275.12 atmosphere 1010.0 14400 > th dose independent rect. 3 8
248 275.13 humidity 80.0 43200 < th dose independent rect. 13 6
272 275.20 humidity 90.0 43200 < th dose independent rect. 14 8
274 275.20 radiation 1.0 43200 < th dose independent rect. 12 11
276 275.20 atmosphere 1010.0 14400 > th dose independent rect. 3 13
278 275.21 radiation 1.0 43200 < th dose independent rect. 12 7
329 275.32 wind 1.0 43200 > th dose independent rect. 21 1
330 275.32 atmosphere 1010.0 14400 < th dose independent rect. 3 9
368 275.37 humidity 90.0 43200 < th dose independent rect. 10 15
409 275.42 humidity 80.0 43200 > th dose independent rect. 14 5
457 275.47 wind 1.0 43200 < th dose dependent rect. 19 4
462 275.48 radiation 1.0 43200 < th dose independent sin 18 NA
480 275.49 atmosphere 1010.0 14400 < th dose independent rect. 2 14
513 275.52 radiation 1.0 43200 < th dose independent rect. 16 5
524 275.53 humidity 90.0 43200 > th dose independent rect. 21 2
525 275.53 radiation 1.0 43200 < th dose independent rect. 16 3
548 275.55 atmosphere 1010.0 14400 > th dose dependent no NA NA
567 275.58 humidity 90.0 43200 < th dose independent sin 18 NA
575 275.59 humidity 90.0 43200 > th dose independent rect. 10 16
582 275.60 atmosphere 1010.0 14400 > th dose dependent rect. 12 23
584 275.61 wind 1.0 43200 > th dose independent rect. 21 4
586 275.61 radiation 1.0 43200 < th dose dependent rect. 12 11
598 275.62 radiation 1.0 43200 < th dose dependent rect. 12 7
607 275.63 humidity 90.0 43200 > th dose dependent rect. 21 2
635 275.65 radiation 1.0 43200 < th dose dependent rect. 12 17
650 275.67 wind 1.0 43200 < th dose independent rect. 21 2
662 275.68 atmosphere 1010.0 14400 > th dose independent sin 3 NA
710 275.73 atmosphere 1010.0 14400 < th dose independent sin 4 NA
725 275.75 humidity 90.0 43200 < th dose independent rect. 21 1
749 275.78 radiation 1.0 43200 > th dose independent rect. 16 1
757 275.78 humidity 80.0 43200 > th dose dependent rect. 17 2
796 275.84 radiation 1.0 43200 < th dose dependent sin 17 NA
861 275.90 radiation 1.0 43200 > th dose independent rect. 12 7
905 275.94 atmosphere 1010.0 14400 > th dose independent rect. 10 1
966 276.04 humidity 90.0 43200 > th dose independent rect. 19 4
985 276.05 radiation 1.0 14400 < th dose dependent rect. 4 2