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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0105800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF594 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (0.0248) R2 : 0.000329
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0202 (0.0522) R2dN8 : 0.000425 R2N8 : 0.000329
σ : 0.467
deviance : 99.99
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
97.03 0.463 2.87 0.0603 0.288 -0.19 0.428 -0.589 -0.0155 1.53 0.5601 9 -- --
97.19 0.463 2.88 0.0255 0.327 -0.231 -0.184 -- -0.0248 1.33 0.87 6 -- --
96.92 0.462 2.88 0.0369 0.327 -0.229 -- -0.245 -0.0221 1.39 0.8683 5 -- --
97.3 0.462 2.88 0.0319 0.327 -0.23 -- -- -0.0238 1.38 0.9301 5 -- --
99.19 0.464 2.87 0.0573 -- -0.00288 -- -0.339 -0.0129 -- 2.58 8 -- --
98.67 0.466 2.87 0.0493 0.154 -- 0.00286 -- -0.018 5.02 -- -- -- --
98.67 0.465 2.87 0.0492 0.154 -- -- -- -0.0181 5.01 -- -- -- --
98.67 0.463 2.88 0.0957 -- 0.124 -- -- -0.00318 -- 3.535e-07 609 -- --
97.33 0.462 2.88 -- 0.33 -0.233 -- -- -0.0274 1.36 0.9301 5 -- --
99.91 0.467 2.87 0.0548 -- -- -- -- -0.0141 -- -- -- -- --
98.73 0.465 2.87 -- 0.155 -- -- -- -0.0235 5 -- -- -- --
98.45 0.462 2.87 -- -- 0.19 -- -- -0.017 -- 0.01 648 -- --
99.99 0.467 2.87 -- -- -- -- -- -0.0202 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 90.70 temperature 20.0 90 < th dose dependent rect. 2 1
4 93.32 temperature 20.0 90 < th dose independent rect. 2 1
18 93.88 radiation 10.0 10 < th dose dependent rect. 5 1
20 93.92 atmosphere 1005.0 10 < th dose independent rect. 5 1
35 94.12 humidity 80.0 10 > th dose dependent rect. 5 8
54 94.24 temperature 25.0 10 > th dose dependent rect. 22 1
67 94.37 atmosphere 1000.0 10 > th dose independent rect. 5 1
74 94.48 wind 3.0 270 > th dose dependent rect. 2 1
76 94.50 humidity 80.0 10 > th dose dependent rect. 5 1
81 94.55 wind 5.0 270 > th dose independent rect. 2 1
82 94.55 wind 3.0 10 < th dose independent rect. 5 1
83 94.55 temperature 25.0 10 < th dose independent rect. 5 1
84 94.55 humidity 90.0 10 > th dose independent rect. 5 5
86 94.55 temperature 30.0 10 < th dose dependent rect. 5 1
88 94.59 humidity 90.0 90 > th dose dependent rect. 4 1
96 94.64 humidity 90.0 90 > th dose independent rect. 4 1
128 94.84 humidity 80.0 10 > th dose independent rect. 5 1
134 94.87 humidity 50.0 10 > th dose independent rect. 6 23
138 94.89 atmosphere 1005.0 10 < th dose dependent rect. 3 4
145 94.91 humidity 80.0 90 > th dose dependent rect. 4 8
148 94.92 atmosphere 1010.0 90 < th dose dependent rect. 4 1
149 94.93 atmosphere 1015.0 10 < th dose dependent rect. 5 1
154 94.94 temperature 25.0 10 > th dose independent rect. 22 1
156 94.94 humidity 90.0 270 > th dose dependent rect. 2 1
170 94.97 humidity 90.0 90 > th dose independent rect. 4 6
171 94.97 radiation 40.0 14400 < th dose dependent rect. 23 1
176 94.98 wind 7.0 10 < th dose dependent rect. 5 1
180 94.98 wind 5.0 270 > th dose dependent rect. 2 5
203 95.02 precipitation 0.1 10 < th dose independent rect. 5 1
204 95.02 precipitation 0.1 270 > th dose independent rect. 24 3
205 95.02 temperature 15.0 10 > th dose independent rect. 6 23
207 95.02 precipitation 0.1 10 < th dose dependent rect. 5 1
208 95.02 precipitation 0.1 270 > th dose dependent rect. 24 3
212 95.03 temperature 10.0 10 > th dose independent rect. 5 1
215 95.03 humidity 50.0 10 > th dose independent rect. 5 1
221 95.03 radiation 20.0 10 < th dose independent rect. 5 1
224 95.03 humidity 90.0 270 > th dose independent rect. 1 2
231 95.05 wind 9.0 10 < th dose independent rect. 6 23
244 95.09 humidity 90.0 30 < th dose dependent rect. 22 1
246 95.09 humidity 90.0 10 > th dose dependent rect. 2 4
250 95.11 wind 1.0 30 > th dose independent rect. 5 1
256 95.12 atmosphere 1000.0 90 > th dose independent rect. 4 1
263 95.13 humidity 90.0 10 > th dose dependent rect. 2 10
266 95.14 atmosphere 1015.0 30 < th dose dependent rect. 22 1
267 95.15 humidity 90.0 30 < th dose independent rect. 22 1
279 95.17 wind 1.0 30 > th dose dependent rect. 22 1
283 95.18 humidity 90.0 10 > th dose dependent rect. 2 8
285 95.18 humidity 90.0 90 > th dose dependent rect. 2 10
334 95.25 wind 9.0 1440 < th dose independent rect. 23 1
335 95.25 temperature 10.0 1440 > th dose independent rect. 23 1
338 95.25 temperature 30.0 1440 < th dose independent rect. 23 1
342 95.25 humidity 50.0 1440 > th dose independent rect. 23 1
352 95.25 atmosphere 995.0 1440 > th dose independent rect. 23 1
353 95.25 radiation 1.0 1440 < th dose independent rect. 23 1
376 95.25 temperature 10.0 1440 > th dose independent rect. 24 23
379 95.25 radiation 1.0 1440 < th dose dependent rect. 23 1
390 95.26 precipitation 0.1 30 < th dose independent rect. 22 1
391 95.26 precipitation 0.1 30 < th dose dependent rect. 22 1
417 95.31 wind 7.0 30 < th dose independent rect. 22 1
419 95.31 temperature 10.0 30 > th dose independent rect. 22 1
421 95.31 temperature 30.0 30 < th dose independent rect. 22 1
423 95.31 humidity 50.0 30 > th dose independent rect. 22 1
426 95.31 atmosphere 995.0 30 > th dose independent rect. 22 1
427 95.31 atmosphere 1010.0 30 < th dose independent rect. 22 1
429 95.31 radiation 1.0 30 < th dose independent rect. 22 1
440 95.31 temperature 10.0 30 > th dose independent rect. 23 23
442 95.31 radiation 1.0 30 < th dose dependent rect. 22 1
453 95.32 wind 1.0 30 > th dose independent rect. 22 1
491 95.37 temperature 20.0 720 < th dose independent rect. 16 1
495 95.37 wind 9.0 30 < th dose dependent rect. 22 1
504 95.38 humidity 50.0 30 > th dose dependent rect. 22 1
505 95.38 atmosphere 1005.0 30 > th dose dependent rect. 22 1
523 95.41 atmosphere 1005.0 30 > th dose independent rect. 22 1
524 95.41 radiation 1.0 90 < th dose independent rect. 4 1
539 95.42 precipitation 0.1 90 < th dose independent rect. 4 1
542 95.42 atmosphere 995.0 30 > th dose dependent rect. 22 1
547 95.42 precipitation 0.1 90 < th dose dependent rect. 4 1
552 95.43 wind 7.0 90 < th dose independent rect. 4 1
554 95.43 temperature 10.0 90 > th dose independent rect. 4 1
557 95.43 humidity 50.0 90 > th dose independent rect. 4 1
569 95.43 temperature 10.0 90 > th dose independent rect. 5 23
587 95.46 humidity 90.0 10 > th dose dependent sin 2 NA
672 95.54 humidity 50.0 90 > th dose independent rect. 6 20
681 95.55 humidity 50.0 90 > th dose independent rect. 6 22
683 95.55 atmosphere 995.0 10 > th dose independent rect. 6 23
715 95.58 radiation 1.0 10 > th dose independent rect. 16 14
718 95.58 humidity 90.0 90 > th dose dependent sin 3 NA
733 95.59 humidity 90.0 10 > th dose independent rect. 5 15
739 95.60 radiation 1.0 90 < th dose independent rect. 4 3
787 95.64 atmosphere 1010.0 270 < th dose dependent rect. 2 1
810 95.66 humidity 90.0 90 > th dose independent rect. 4 16
821 95.67 temperature 10.0 10 > th dose dependent rect. 5 1
891 95.72 radiation 1.0 10 > th dose independent rect. 5 1
920 95.73 wind 9.0 90 < th dose dependent rect. 4 1
922 95.73 atmosphere 995.0 10 > th dose dependent rect. 5 1
937 95.74 temperature 30.0 30 < th dose dependent rect. 22 1
942 95.75 humidity 90.0 10 > th dose independent rect. 2 10
978 95.77 wind 9.0 90 < th dose independent rect. 5 23
979 95.77 precipitation 0.1 10 < th dose independent rect. 6 23
980 95.77 temperature 20.0 720 < th dose dependent rect. 16 1
991 95.77 precipitation 0.1 10 < th dose dependent rect. 6 23