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Os07g0105600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Photosystem II oxygen evolving complex protein PsbQ family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.7 (0.0192) R2 : 0.907
β1 : -0.791 (0.0692) R2dD : 0.0285 R2D : 0.00534
β2 : 1.65 (0.076) R2dC : 0.257 R2C : 0.615
β3 : -1.76 (0.0887) R2dE : 0.218 R2E : 0.589
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.447 (0.0409) R2dN8 : 0.034 R2N8 : 0.0336
σ : 0.352
deviance : 57.19
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C
peak time of C : 20.8
E
wheather : temperature
threshold : 19.59
memory length : 268
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.26
open length of G : 5.8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
56.13 0.352 13.7 -0.877 1.6 -1.83 -0.653 -1.13 -0.463 20.9 19.4 267 3.22 5.83
57.23 0.352 13.7 -0.791 1.62 -1.77 -0.0712 -- -0.452 20.9 19.47 269 3.2 5.93
56.81 0.351 13.7 -0.821 1.62 -1.8 -- -0.487 -0.457 20.9 19.45 270 3.2 5.84
57.19 0.352 13.7 -0.791 1.65 -1.76 -- -- -0.447 20.8 19.59 268 3.26 5.8
86.99 0.434 13.7 -0.46 -- -2.62 -- -0.449 -0.345 -- 18.5 241 3 7.56
105.12 0.481 13.8 -0.897 2.87 -- 0.0291 -- -0.598 20.6 -- -- -- --
105.12 0.48 13.8 -0.898 2.87 -- -- -- -0.598 20.6 -- -- -- --
83.87 0.427 13.7 -0.468 -- -2.59 -- -- -0.407 -- 18.54 237 2.85 7.88
73.53 0.399 13.7 -- 1.58 -1.79 -- -- -0.392 20.8 19.4 271 3.18 6.02
568.24 1.11 13.7 -0.906 -- -- -- -- -0.623 -- -- -- -- --
126.36 0.526 13.8 -- 2.87 -- -- -- -0.498 20.6 -- -- -- --
92.26 0.447 13.7 -- -- -2.75 -- -- -0.352 -- 18.6 248 2.68 7.9
589.88 1.13 13.7 -- -- -- -- -- -0.523 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 57.55 temperature 20.0 270 > th dose independent rect. 3 6
5 61.71 temperature 15.0 270 > th dose dependent rect. 3 6
7 62.81 temperature 15.0 270 > th dose dependent rect. 4 4
22 67.36 humidity 80.0 270 > th dose independent rect. 4 5
27 67.82 temperature 20.0 10 > th dose dependent rect. 5 6
34 68.70 humidity 50.0 270 > th dose dependent rect. 3 7
37 68.97 humidity 60.0 270 > th dose dependent rect. 4 5
53 70.53 temperature 25.0 10 > th dose independent rect. 5 6
69 71.52 radiation 20.0 270 < th dose independent rect. 4 5
73 71.68 wind 9.0 270 < th dose dependent rect. 4 5
74 71.69 wind 9.0 270 < th dose dependent rect. 3 7
79 71.99 temperature 30.0 270 < th dose independent rect. 3 7
87 72.44 radiation 30.0 270 < th dose independent rect. 3 7
90 72.52 wind 9.0 270 < th dose independent rect. 21 7
91 72.53 radiation 1.0 270 < th dose dependent rect. 21 7
92 72.54 temperature 10.0 270 > th dose independent rect. 21 7
93 72.54 temperature 30.0 270 < th dose independent rect. 21 7
94 72.54 humidity 50.0 270 > th dose independent rect. 21 7
97 72.54 atmosphere 995.0 270 > th dose independent rect. 21 7
98 72.54 radiation 1.0 270 < th dose independent rect. 21 7
103 72.54 temperature 10.0 270 > th dose independent rect. 4 17
108 72.56 precipitation 0.1 270 < th dose independent rect. 21 7
109 72.56 precipitation 0.1 270 < th dose dependent rect. 21 7
116 72.83 radiation 40.0 270 < th dose dependent rect. 4 5
120 73.05 precipitation 0.1 270 < th dose independent rect. 9 18
121 73.05 precipitation 0.1 270 < th dose dependent rect. 9 18
128 73.23 wind 9.0 270 < th dose independent rect. 4 17
134 73.40 wind 3.0 270 < th dose independent rect. 4 5
144 73.68 precipitation 0.1 270 < th dose independent rect. 3 6
145 73.68 precipitation 0.1 270 < th dose dependent rect. 3 6
146 73.73 atmosphere 1015.0 270 < th dose independent rect. 4 17
152 73.83 atmosphere 995.0 270 > th dose independent rect. 4 17
154 73.84 wind 7.0 270 < th dose independent rect. 3 6
155 73.88 precipitation 0.1 270 < th dose independent rect. 22 5
156 73.88 precipitation 0.1 270 < th dose dependent rect. 22 5
161 73.94 wind 7.0 270 < th dose independent rect. 22 5
163 73.94 temperature 10.0 270 > th dose independent rect. 3 6
165 73.94 humidity 50.0 270 > th dose independent rect. 3 6
166 73.94 atmosphere 995.0 270 > th dose independent rect. 3 6
167 73.94 atmosphere 1015.0 270 < th dose independent rect. 3 6
168 73.94 temperature 10.0 270 > th dose independent rect. 9 18
170 74.01 temperature 15.0 270 > th dose independent rect. 22 5
175 74.04 temperature 30.0 270 < th dose independent rect. 22 5
176 74.04 humidity 50.0 270 > th dose independent rect. 22 5
179 74.04 atmosphere 995.0 270 > th dose independent rect. 22 5
180 74.04 radiation 1.0 270 < th dose independent rect. 22 5
185 74.04 temperature 10.0 270 > th dose independent rect. 3 19
186 74.04 radiation 1.0 270 < th dose dependent rect. 22 5
193 74.11 wind 9.0 270 < th dose independent rect. 9 18
195 74.14 humidity 50.0 270 > th dose dependent rect. 17 16
216 74.35 precipitation 0.1 270 < th dose independent rect. 4 17
217 74.35 precipitation 0.1 270 < th dose dependent rect. 4 17
231 74.55 atmosphere 1015.0 270 < th dose independent rect. 22 5
236 74.65 atmosphere 1015.0 270 < th dose independent rect. 21 7
256 74.70 wind 9.0 270 < th dose independent rect. 3 19
257 74.71 radiation 20.0 270 < th dose independent rect. 17 16
274 75.12 atmosphere 995.0 270 > th dose independent rect. 3 19
281 75.27 radiation 40.0 270 < th dose dependent rect. 4 18
295 75.47 temperature 10.0 90 > th dose dependent rect. 11 17
305 75.61 radiation 40.0 270 < th dose independent rect. 3 19
309 75.68 radiation 1.0 90 < th dose independent rect. 23 8
311 75.71 atmosphere 995.0 270 > th dose independent rect. 17 15
319 75.77 temperature 10.0 270 > th dose dependent rect. 22 5
323 75.81 radiation 1.0 90 < th dose dependent rect. 23 8
326 75.88 radiation 1.0 90 < th dose dependent rect. 23 12
329 75.90 precipitation 0.1 270 < th dose independent rect. 3 19
330 75.90 precipitation 0.1 270 < th dose dependent rect. 3 19
350 76.18 radiation 1.0 90 < th dose dependent sin 8 NA
355 76.23 radiation 40.0 270 < th dose dependent rect. 16 17
358 76.26 temperature 10.0 270 > th dose independent rect. 8 9
359 76.26 atmosphere 1015.0 270 < th dose independent rect. 8 9
360 76.26 temperature 10.0 270 > th dose independent rect. 17 15
369 76.37 radiation 40.0 270 < th dose independent rect. 13 10
376 76.42 wind 9.0 270 < th dose independent rect. 17 15
381 76.46 radiation 1.0 90 > th dose independent rect. 5 6
382 76.46 radiation 1.0 90 < th dose independent rect. 23 12
390 76.52 precipitation 0.1 270 < th dose independent rect. 8 9
400 76.52 precipitation 0.1 270 < th dose dependent rect. 8 9
409 76.57 wind 9.0 270 < th dose independent rect. 8 9
443 76.72 wind 1.0 270 > th dose independent rect. 9 18
452 76.79 temperature 10.0 270 > th dose independent rect. 14 9
453 76.79 temperature 10.0 270 > th dose independent rect. 23 15
454 76.79 atmosphere 995.0 270 > th dose independent rect. 23 15
456 76.82 wind 1.0 270 > th dose independent rect. 22 5
458 76.83 atmosphere 1015.0 270 < th dose independent rect. 23 15
459 76.84 atmosphere 1015.0 270 < th dose independent rect. 3 19
460 76.85 radiation 1.0 90 > th dose independent sin 8 NA
461 76.85 radiation 1.0 90 < th dose independent sin 8 NA
466 76.91 wind 9.0 270 < th dose independent rect. 23 15
469 76.93 atmosphere 1015.0 270 < th dose independent rect. 9 18
487 77.12 wind 3.0 270 < th dose independent rect. 5 2
525 77.30 wind 1.0 270 > th dose independent rect. 8 9
533 77.39 wind 9.0 270 < th dose independent rect. 14 9
536 77.41 humidity 50.0 270 > th dose independent rect. 17 15
576 77.63 precipitation 0.1 270 < th dose independent rect. 23 15
577 77.63 precipitation 0.1 270 < th dose dependent rect. 23 15
594 77.78 wind 9.0 270 < th dose dependent rect. 22 5
605 77.88 temperature 10.0 270 > th dose dependent rect. 21 7
615 77.98 humidity 70.0 270 > th dose dependent rect. 3 19
687 78.47 radiation 1.0 270 > th dose independent rect. 9 8
714 78.65 temperature 10.0 270 > th dose dependent rect. 23 3
715 78.66 radiation 10.0 10 < th dose dependent sin 8 NA
757 78.81 wind 9.0 270 < th dose dependent rect. 4 17
758 78.82 atmosphere 1015.0 270 < th dose independent rect. 22 17
781 78.86 precipitation 0.1 270 < th dose independent rect. 17 15
792 78.86 precipitation 0.1 270 < th dose dependent rect. 17 15
796 78.90 radiation 1.0 270 < th dose dependent rect. 21 10
803 78.94 wind 9.0 270 < th dose independent rect. 22 17
814 79.00 temperature 10.0 270 > th dose dependent rect. 9 18
850 79.17 wind 9.0 270 < th dose dependent rect. 3 19
858 79.21 wind 9.0 270 < th dose independent rect. 15 7
859 79.21 atmosphere 995.0 270 > th dose independent rect. 15 7
864 79.24 radiation 1.0 270 < th dose dependent rect. 21 12
868 79.26 precipitation 0.1 270 < th dose independent rect. 22 17
872 79.26 precipitation 0.1 270 < th dose dependent rect. 22 17
882 79.29 humidity 50.0 270 > th dose independent rect. 23 15
884 79.29 atmosphere 995.0 270 > th dose independent rect. 9 19
899 79.32 humidity 50.0 270 > th dose independent rect. 9 19
901 79.33 atmosphere 995.0 270 > th dose independent rect. 14 9
906 79.34 atmosphere 995.0 270 > th dose dependent rect. 4 5
908 79.34 wind 9.0 270 < th dose dependent rect. 21 7
945 79.44 temperature 10.0 10 > th dose dependent rect. 11 18