Os07g0104600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Haem peroxidase, plant/fungal/bacterial family protein.
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Os07g0104600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Haem peroxidase, plant/fungal/bacterial family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 127.24 | 0.53 | 5.18 | 0.39 | 0.756 | -1.31 | 0.101 | 0.484 | -0.332 | 11.8 | 21.7 | 2112 | -- | -- |
| 127.86 | 0.527 | 5.19 | 0.298 | 0.756 | -1.35 | 0.0974 | -- | -0.339 | 11.8 | 21.7 | 2083 | -- | -- |
| 127.27 | 0.525 | 5.18 | 0.389 | 0.757 | -1.31 | -- | 0.458 | -0.333 | 11.8 | 21.7 | 2084 | -- | -- |
| 127.74 | 0.526 | 5.2 | 0.25 | 0.76 | -1.33 | -- | -- | -0.367 | 11.8 | 21.77 | 2082 | -- | -- |
| 151.58 | 0.573 | 5.21 | 0.225 | -- | -1.24 | -- | 0.592 | -0.348 | -- | 22.2 | 869 | -- | -- |
| 182.4 | 0.633 | 5.29 | -0.364 | 0.847 | -- | 0.0527 | -- | -0.788 | 11.6 | -- | -- | -- | -- |
| 182.41 | 0.632 | 5.29 | -0.362 | 0.847 | -- | -- | -- | -0.788 | 11.7 | -- | -- | -- | -- |
| 151.77 | 0.574 | 5.22 | 0.0893 | -- | -1.35 | -- | -- | -0.37 | -- | 21.99 | 883 | -- | -- |
| 128.55 | 0.528 | 5.21 | -- | 0.793 | -1.2 | -- | -- | -0.394 | 11.8 | 22.16 | 1952 | -- | -- |
| 227.47 | 0.705 | 5.31 | -0.386 | -- | -- | -- | -- | -0.798 | -- | -- | -- | -- | -- |
| 185.86 | 0.638 | 5.29 | -- | 0.851 | -- | -- | -- | -0.748 | 11.7 | -- | -- | -- | -- |
| 151.92 | 0.574 | 5.22 | -- | -- | -1.35 | -- | -- | -0.391 | -- | 21.87 | 877 | -- | -- |
| 231.39 | 0.71 | 5.3 | -- | -- | -- | -- | -- | -0.755 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.16 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 17 |
| 5 | 128.52 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 13 | 129.53 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 15 | 129.55 | temperature | 15 | 270 | > th | dose dependent | sin | 7 | NA |
| 18 | 129.66 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 29 | 129.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 38 | 130.04 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 77 | 130.57 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 85 | 130.63 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 99 | 130.79 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 126 | 130.99 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 132 | 131.02 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 163 | 131.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 168 | 131.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 207 | 131.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 215 | 131.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 230 | 131.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 291 | 132.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 310 | 132.13 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 381 | 132.49 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 385 | 132.51 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 8 |