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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0104500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haem peroxidase, plant/fungal/bacterial family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.37 (0.0549) R2 : 0.228
β1 : 0.884 (0.206) R2dD : 0.0364 R2D : -0.0246
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.41 (0.298) R2dE : 0.255 R2E : 0.162
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.52 (0.121) R2dN8 : 0.0433 R2N8 : -0.0257
σ : 1.02
deviance : 476.16
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.569
memory length : 1548
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
446.63 0.993 3.45 0.648 0.709 3.92 2 4.18 0.43 23.9 0.9867 1455 -- --
455.14 0.994 3.39 1.09 0.544 3.21 2.17 -- 0.494 23.6 1.043 1475 -- --
460.16 0.999 3.43 0.669 0.197 3.95 -- 3.63 0.451 23.7 0.9491 1516 -- --
474.31 1.01 3.39 1.02 0.682 3.13 -- -- 0.5 0.445 1.081 1462 -- --
458.39 0.997 3.47 0.561 -- 4.25 -- 4.89 0.37 -- 0.79 1534 -- --
556.08 1.11 3.48 0.35 0.838 -- 1.85 -- 0.102 23.8 -- -- -- --
570.13 1.12 3.48 0.272 0.839 -- -- -- 0.0907 0.351 -- -- -- --
476.16 1.02 3.37 0.884 -- 3.41 -- -- 0.52 -- 1.569 1548 -- --
493.55 1.03 3.42 -- 0.464 2.71 -- -- 0.344 0.417 1.86 1497 -- --
614.35 1.16 3.46 0.3 -- -- -- -- 0.104 -- -- -- -- --
572.08 1.12 3.49 -- 0.843 -- -- -- 0.0604 0.367 -- -- -- --
495.02 1.04 3.41 -- -- 3.02 -- -- 0.355 -- 1.86 1565 -- --
616.73 1.16 3.47 -- -- -- -- -- 0.0708 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 439.90 radiation 1.0 1440 < th dose dependent rect. 16 19
15 441.21 radiation 1.0 1440 < th dose dependent sin 12 NA
50 447.29 radiation 1.0 1440 < th dose dependent rect. 4 22
51 447.31 radiation 1.0 1440 < th dose dependent rect. 23 23
52 447.32 radiation 1.0 1440 < th dose dependent rect. 4 18
70 447.46 radiation 1.0 1440 < th dose dependent no NA NA
78 447.49 radiation 1.0 1440 < th dose dependent rect. 20 23
85 447.52 radiation 1.0 1440 < th dose dependent rect. 10 23
114 448.73 radiation 1.0 1440 < th dose dependent rect. 7 23
115 448.93 radiation 1.0 1440 < th dose dependent rect. 17 9
119 449.16 radiation 1.0 1440 < th dose dependent rect. 17 5
120 449.17 radiation 1.0 1440 < th dose dependent rect. 17 3
155 453.30 precipitation 0.1 43200 > th dose independent rect. 19 1
165 453.88 precipitation 0.1 43200 < th dose independent rect. 19 1
166 453.88 precipitation 0.1 43200 < th dose dependent rect. 19 1
167 453.92 humidity 90.0 43200 < th dose independent rect. 20 1
171 454.48 radiation 1.0 1440 < th dose dependent sin 2 NA
194 455.23 humidity 90.0 43200 < th dose independent rect. 19 3
198 455.51 wind 5.0 43200 < th dose dependent rect. 11 1
199 455.81 humidity 90.0 43200 > th dose independent rect. 20 3
201 455.88 radiation 1.0 1440 < th dose independent rect. 15 18
239 457.51 radiation 1.0 1440 < th dose independent sin 12 NA
247 457.77 radiation 1.0 1440 > th dose independent rect. 15 18
289 458.74 humidity 90.0 43200 > th dose dependent rect. 19 4
290 458.75 humidity 90.0 43200 > th dose dependent rect. 21 1
308 459.36 wind 1.0 43200 > th dose dependent rect. 11 1
311 459.52 radiation 1.0 14400 < th dose independent rect. 18 3
317 459.61 radiation 1.0 14400 < th dose independent rect. 18 6
318 459.61 radiation 1.0 14400 < th dose independent rect. 18 8
321 459.65 radiation 1.0 1440 > th dose independent sin 12 NA
328 459.71 radiation 1.0 14400 > th dose independent rect. 18 1
348 460.11 radiation 1.0 14400 < th dose dependent rect. 18 4
349 460.13 radiation 1.0 14400 < th dose dependent rect. 18 2
352 460.15 radiation 1.0 14400 < th dose dependent rect. 18 6
369 460.49 radiation 1.0 1440 < th dose independent rect. 16 14
380 460.77 precipitation 0.1 43200 > th dose dependent rect. 19 1
386 460.87 radiation 1.0 1440 < th dose independent rect. 5 21
390 460.93 radiation 1.0 1440 < th dose independent rect. 5 16
403 461.08 radiation 1.0 1440 < th dose independent rect. 23 23
425 461.19 radiation 1.0 1440 < th dose independent no NA NA
443 461.25 radiation 1.0 1440 < th dose independent rect. 10 23
463 461.51 wind 3.0 43200 > th dose dependent rect. 20 1
469 461.76 wind 9.0 43200 < th dose dependent rect. 20 1
471 461.82 radiation 1.0 1440 > th dose independent rect. 16 14
477 462.09 wind 9.0 43200 > th dose independent rect. 19 2
484 462.29 wind 3.0 43200 > th dose independent rect. 11 1
485 462.30 wind 5.0 43200 < th dose dependent rect. 9 4
489 462.49 radiation 1.0 1440 < th dose independent rect. 7 23
491 462.51 wind 3.0 43200 < th dose independent rect. 8 5
493 462.59 wind 3.0 43200 < th dose independent rect. 11 1
508 462.81 radiation 1.0 1440 < th dose dependent rect. 4 8
511 462.88 radiation 1.0 1440 < th dose dependent rect. 23 13
512 462.91 wind 9.0 43200 < th dose independent rect. 19 2
519 463.02 wind 3.0 43200 > th dose independent rect. 8 5
527 463.06 humidity 80.0 43200 < th dose independent rect. 5 2
534 463.09 radiation 1.0 1440 > th dose independent rect. 5 14
544 463.10 radiation 1.0 14400 < th dose dependent rect. 4 1
557 463.26 radiation 1.0 1440 > th dose independent no NA NA
615 463.33 radiation 1.0 1440 > th dose independent rect. 10 23
695 463.82 radiation 1.0 14400 < th dose dependent rect. 1 4
705 463.92 wind 9.0 43200 > th dose dependent rect. 19 2
707 463.99 humidity 80.0 43200 < th dose independent rect. 4 4
715 464.21 radiation 1.0 1440 > th dose independent rect. 7 23
716 464.21 humidity 90.0 14400 > th dose dependent rect. 19 8
746 464.65 wind 1.0 43200 > th dose dependent rect. 9 4
761 464.79 wind 3.0 43200 > th dose dependent rect. 5 11
766 464.83 wind 7.0 43200 > th dose independent rect. 15 1
774 464.89 wind 5.0 43200 > th dose dependent rect. 10 11
777 464.92 wind 7.0 43200 < th dose independent rect. 15 1
845 465.58 wind 3.0 43200 > th dose independent rect. 9 1
857 465.65 wind 5.0 43200 > th dose dependent rect. 10 15
862 465.69 wind 9.0 43200 > th dose dependent rect. 19 4
883 465.89 humidity 90.0 1440 > th dose dependent rect. 6 17
891 465.97 wind 5.0 43200 < th dose independent rect. 5 12
908 466.08 wind 3.0 43200 > th dose dependent sin 1 NA
927 466.19 wind 7.0 43200 < th dose independent rect. 5 16
937 466.22 wind 5.0 43200 > th dose dependent sin 20 NA
938 466.22 temperature 20.0 14400 > th dose dependent rect. 17 1
942 466.26 wind 3.0 43200 > th dose dependent rect. 9 7
948 466.30 radiation 1.0 1440 < th dose independent sin 2 NA
962 466.37 humidity 80.0 43200 > th dose independent rect. 12 1
963 466.37 wind 5.0 43200 > th dose independent rect. 5 17
987 466.55 wind 5.0 43200 > th dose independent rect. 5 12