FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0104400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haem peroxidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.24 (0.0359) R2 : 0.432
β1 : -0.774 (0.131) R2dD : 0.0452 R2D : -0.0317
β2 : 0.792 (0.101) R2dC : 0.0916 R2C : 0.119
β3 : 1.62 (0.206) R2dE : 0.0968 R2E : 0.169
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.771 (0.0781) R2dN8 : 0.17 R2N8 : 0.143
σ : 0.669
deviance : 206.29
__
_____
C
peak time of C : 7.01
E
wheather : humidity
threshold : 93.9
memory length : 112
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
201.54 0.667 4.25 -0.8 0.814 1.5 1.2 -2.1 -0.754 7.1 93.6 110 -- --
205.18 0.667 4.26 -0.757 0.784 1.65 0.94 -- -0.769 6.96 93.87 116 -- --
204.81 0.667 4.25 -0.782 0.799 1.57 -- -1.4 -0.759 7.05 93.68 113 -- --
206.29 0.669 4.24 -0.774 0.792 1.62 -- -- -0.771 7.01 93.9 112 -- --
232.83 0.711 4.25 -0.802 -- 2.02 -- -1.44 -0.685 -- 93.53 130 -- --
228.54 0.709 4.26 -0.704 1.13 -- 1.15 -- -0.9 6.42 -- -- -- --
231.74 0.713 4.27 -0.69 1.14 -- -- -- -0.904 6.31 -- -- -- --
233.48 0.712 4.24 -0.82 -- 2.05 -- -- -0.686 -- 93.42 168 -- --
221.85 0.694 4.23 -- 0.815 1.57 -- -- -0.699 6.94 94 112 -- --
299.3 0.808 4.29 -0.66 -- -- -- -- -0.88 -- -- -- -- --
244.29 0.731 4.25 -- 1.13 -- -- -- -0.828 6.34 -- -- -- --
250.53 0.737 4.24 -- -- 2.12 -- -- -0.624 -- 93.82 119 -- --
310.77 0.823 4.27 -- -- -- -- -- -0.807 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 192.78 temperature 25 30 < th dose independent rect. 2 10
6 193.95 temperature 25 10 < th dose independent rect. 2 6
18 196.47 temperature 30 270 < th dose dependent rect. 24 11
26 197.27 humidity 80 14400 < th dose dependent rect. 6 1
28 197.30 temperature 25 10 < th dose independent rect. 2 4
39 198.05 temperature 25 30 < th dose independent sin 5 NA
43 198.27 wind 9 43200 > th dose independent rect. 11 2
57 198.99 temperature 20 270 > th dose dependent rect. 3 8
61 199.12 temperature 25 10 < th dose independent rect. 2 16
75 199.61 temperature 25 30 > th dose independent sin 5 NA
83 199.89 wind 9 43200 < th dose independent rect. 11 1
96 200.28 wind 9 43200 > th dose dependent rect. 11 2
113 200.65 wind 9 43200 > th dose independent rect. 11 5
122 200.80 temperature 10 10 > th dose dependent rect. 6 20
124 200.83 humidity 90 10 > th dose independent rect. 2 4
132 200.98 wind 9 43200 > th dose dependent rect. 14 2
143 201.14 humidity 80 14400 < th dose dependent rect. 21 10
145 201.15 humidity 90 10 > th dose dependent rect. 2 4
147 201.19 wind 9 43200 < th dose independent rect. 11 5
153 201.31 temperature 10 270 > th dose dependent rect. 4 9
166 201.55 wind 9 43200 < th dose independent rect. 24 1
167 201.55 humidity 80 14400 > th dose independent rect. 2 2
171 201.58 wind 9 14400 < th dose independent rect. 15 1
173 201.62 wind 9 43200 > th dose independent rect. 14 2
188 201.74 humidity 90 90 > th dose dependent rect. 3 2
193 201.80 temperature 25 270 < th dose independent rect. 1 2
219 202.13 wind 9 43200 < th dose independent rect. 13 3
229 202.21 wind 9 43200 > th dose dependent rect. 11 6
233 202.26 temperature 25 30 > th dose independent rect. 1 13
239 202.31 temperature 10 270 > th dose dependent rect. 19 14
247 202.40 humidity 80 14400 < th dose dependent rect. 22 1
259 202.50 humidity 80 14400 < th dose independent rect. 5 2
260 202.50 humidity 90 10 > th dose independent rect. 2 10
264 202.52 wind 9 14400 < th dose independent rect. 6 8
266 202.53 humidity 90 90 > th dose dependent rect. 1 6
272 202.57 wind 9 14400 < th dose independent rect. 8 6
281 202.63 humidity 80 14400 < th dose independent rect. 21 10
295 202.69 wind 9 14400 < th dose independent rect. 6 10
306 202.75 humidity 80 14400 < th dose independent rect. 2 5
327 202.89 temperature 10 270 > th dose dependent rect. 4 20
332 202.94 humidity 80 14400 > th dose independent rect. 22 9
333 202.94 temperature 10 10 > th dose dependent rect. 6 10
349 203.02 humidity 90 90 > th dose dependent rect. 1 11
363 203.07 humidity 80 14400 < th dose independent rect. 2 2
370 203.10 wind 9 43200 > th dose independent rect. 11 9
388 203.19 humidity 90 10 > th dose independent rect. 2 17
411 203.31 humidity 90 10 > th dose dependent rect. 24 6
415 203.33 humidity 80 14400 > th dose independent rect. 4 3
424 203.36 temperature 20 90 > th dose dependent sin 6 NA
446 203.43 humidity 90 10 > th dose dependent rect. 2 17
455 203.46 humidity 80 14400 > th dose independent rect. 4 1
472 203.54 humidity 90 90 > th dose dependent sin 7 NA
474 203.56 humidity 90 10 > th dose dependent rect. 2 10
492 203.61 temperature 30 720 < th dose dependent rect. 24 4
524 203.78 wind 9 14400 > th dose independent rect. 1 15
529 203.79 temperature 25 10 > th dose independent rect. 1 10
551 203.85 humidity 90 90 > th dose dependent rect. 1 22
588 203.94 temperature 25 30 > th dose independent rect. 1 15
594 203.97 wind 9 43200 > th dose dependent rect. 11 9
628 204.10 wind 9 14400 < th dose independent rect. 1 15
673 204.28 humidity 60 14400 > th dose independent rect. 9 1
681 204.30 radiation 10 43200 < th dose dependent rect. 18 18
688 204.33 temperature 25 270 > th dose independent rect. 1 10
718 204.46 humidity 90 90 > th dose dependent rect. 1 20
724 204.50 radiation 40 43200 > th dose independent rect. 13 20
730 204.53 humidity 60 14400 < th dose independent rect. 9 1
750 204.59 humidity 90 10 > th dose dependent rect. 2 20
766 204.63 radiation 20 43200 > th dose independent rect. 15 1
773 204.64 radiation 10 43200 < th dose dependent rect. 4 8
780 204.65 radiation 10 43200 < th dose dependent rect. 22 14
801 204.70 wind 9 14400 > th dose dependent rect. 1 15
837 204.79 temperature 15 30 > th dose dependent rect. 6 8
851 204.81 temperature 25 30 > th dose independent rect. 23 15
865 204.83 wind 1 43200 < th dose dependent rect. 22 1
869 204.85 wind 9 14400 > th dose independent sin 3 NA
872 204.86 radiation 40 43200 > th dose independent sin 13 NA
887 204.89 humidity 90 10 > th dose dependent rect. 24 19
915 204.96 humidity 90 10 > th dose dependent rect. 24 12
946 205.06 radiation 40 43200 > th dose independent rect. 13 3
964 205.06 radiation 10 43200 < th dose dependent sin 7 NA
970 205.07 temperature 15 720 > th dose dependent rect. 4 3
972 205.08 radiation 20 43200 < th dose independent rect. 15 1
989 205.10 radiation 10 43200 < th dose dependent rect. 15 22