Os07g0101400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TRAF-like domain containing protein.
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Os07g0101400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TRAF-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.19 | 0.189 | 10.8 | 0.37 | 0.425 | -0.693 | -0.194 | 1.04 | -0.0751 | 6.87 | 49.86 | 1120 | -- | -- |
| 16.47 | 0.189 | 10.8 | 0.318 | 0.415 | -0.469 | -0.276 | -- | -0.0717 | 6.91 | 50.23 | 876 | -- | -- |
| 16.28 | 0.188 | 10.8 | 0.366 | 0.425 | -0.694 | -- | 1.06 | -0.0745 | 6.89 | 49.88 | 1120 | -- | -- |
| 16.67 | 0.19 | 10.8 | 0.312 | 0.412 | -0.457 | -- | -- | -0.067 | 6.93 | 50.73 | 876 | -- | -- |
| 24.99 | 0.233 | 10.8 | 0.345 | -- | -0.667 | -- | 0.658 | -0.0592 | -- | 50.13 | 695 | -- | -- |
| 18.66 | 0.203 | 10.8 | 0.24 | 0.425 | -- | -0.175 | -- | -0.0372 | 7.23 | -- | -- | -- | -- |
| 18.75 | 0.203 | 10.8 | 0.237 | 0.424 | -- | -- | -- | -0.0367 | 7.27 | -- | -- | -- | -- |
| 18.92 | 0.203 | 10.8 | 0.282 | -- | -0.519 | -- | -- | -0.0186 | -- | 74.61 | 694 | -- | -- |
| 18.95 | 0.203 | 10.8 | -- | 0.407 | -0.286 | -- | -- | -0.101 | 6.91 | 52.9 | 984 | -- | -- |
| 28.29 | 0.249 | 10.8 | 0.244 | -- | -- | -- | -- | -0.0295 | -- | -- | -- | -- | -- |
| 20.22 | 0.21 | 10.8 | -- | 0.427 | -- | -- | -- | -0.0631 | 7.23 | -- | -- | -- | -- |
| 21.06 | 0.214 | 10.8 | -- | -- | -0.479 | -- | -- | -0.0435 | -- | 74.47 | 684 | -- | -- |
| 29.86 | 0.255 | 10.8 | -- | -- | -- | -- | -- | -0.0566 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.66 | humidity | 80 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 3 | 15.67 | humidity | 80 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 6 | 15.68 | humidity | 80 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 9 | 15.68 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 18 | 15.73 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 20 | 15.74 | humidity | 80 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 25 | 15.76 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 28 | 15.77 | humidity | 80 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 29 | 15.78 | wind | 7 | 14400 | < th | dose independent | rect. | 10 | 6 |
| 30 | 15.78 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 35 | 15.79 | humidity | 80 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 36 | 15.79 | humidity | 80 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 37 | 15.79 | wind | 7 | 14400 | > th | dose independent | rect. | 10 | 6 |
| 53 | 15.82 | wind | 7 | 14400 | > th | dose dependent | rect. | 10 | 5 |
| 54 | 15.83 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 63 | 15.84 | humidity | 80 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 79 | 15.85 | wind | 1 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 82 | 15.85 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 88 | 15.86 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 89 | 15.86 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 95 | 15.87 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 96 | 15.87 | wind | 7 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 99 | 15.87 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 11 |
| 104 | 15.88 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 105 | 15.88 | wind | 7 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 111 | 15.88 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 131 | 15.90 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 11 |
| 157 | 15.92 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 160 | 15.93 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 166 | 15.93 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 6 |
| 169 | 15.93 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 8 |
| 234 | 15.98 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 15 |
| 235 | 15.98 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 15 |
| 252 | 15.99 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 257 | 16.00 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 262 | 16.00 | wind | 9 | 43200 | < th | dose dependent | rect. | 10 | 5 |
| 264 | 16.00 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 8 |
| 268 | 16.00 | wind | 7 | 14400 | > th | dose dependent | rect. | 24 | 16 |
| 284 | 16.01 | wind | 1 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 287 | 16.01 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 8 |
| 359 | 16.04 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 360 | 16.05 | wind | 3 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 361 | 16.05 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 390 | 16.06 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 395 | 16.06 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 7 |
| 403 | 16.06 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 17 |
| 406 | 16.06 | wind | 9 | 14400 | < th | dose independent | rect. | 19 | 20 |
| 428 | 16.07 | humidity | 60 | 720 | > th | dose independent | rect. | 17 | 15 |
| 456 | 16.08 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 484 | 16.10 | wind | 3 | 43200 | > th | dose independent | sin | 2 | NA |
| 485 | 16.10 | wind | 3 | 43200 | < th | dose independent | sin | 2 | NA |
| 500 | 16.10 | wind | 7 | 14400 | > th | dose dependent | sin | 2 | NA |
| 502 | 16.10 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 2 |
| 510 | 16.10 | wind | 9 | 43200 | < th | dose dependent | rect. | 4 | 14 |
| 512 | 16.11 | humidity | 50 | 4320 | < th | dose independent | sin | 12 | NA |
| 555 | 16.11 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 11 |
| 564 | 16.12 | wind | 1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 568 | 16.12 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 598 | 16.13 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 603 | 16.13 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 15 |
| 608 | 16.13 | wind | 9 | 43200 | < th | dose dependent | sin | 0 | NA |
| 621 | 16.13 | wind | 5 | 43200 | < th | dose dependent | rect. | 24 | 17 |
| 622 | 16.13 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 18 |
| 623 | 16.13 | wind | 9 | 43200 | < th | dose dependent | rect. | 24 | 18 |
| 646 | 16.14 | wind | 9 | 14400 | > th | dose independent | rect. | 19 | 20 |
| 683 | 16.14 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 21 |
| 684 | 16.15 | wind | 7 | 14400 | > th | dose independent | sin | 2 | NA |
| 704 | 16.15 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 705 | 16.15 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 9 |
| 730 | 16.15 | wind | 1 | 43200 | > th | dose dependent | sin | 0 | NA |
| 734 | 16.15 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 782 | 16.16 | humidity | 60 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 809 | 16.16 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 853 | 16.17 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 970 | 16.19 | wind | 7 | 14400 | < th | dose independent | sin | 2 | NA |